Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_033775.1
Length=376207
Score E
Sequences producing significant alignments: (Bits) Value
seq819 188 2e-42
seq1424 134 3e-26
>seq819
Length=4427
Score = 188 bits (208), Expect = 2e-42
Identities = 162/198 (82%), Gaps = 2/198 (1%)
Strand=Plus/Plus
Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992
|||||||| ||||| || || || |||||| | ||||||||| ||||| ||||||||
Sbjct 1592 GTGAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAATCTTCAGATACCATCGAC 1651
Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052
||||| || || || ||||| |||||||| ||||| ||||| |||||||| || |||
Sbjct 1652 AACGTGAAGAGCAAAATCCAGGATAAAGAAGGGATCCCCCCGGATCAGCAACGTCTGATC 1711
Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGA 178111
||||| ||||| |||||||||||||| | || |||| | ||||||||| ||||||||||
Sbjct 1712 TTCGCTGGAAAGCAGCTCGAAGATGGCCGCAC-CTTGTCGGATTATAACATCCAAAAAGA 1770
Query 178112 ATCAACACTGCATCTTGT 178129
|||||| || ||||||||
Sbjct 1771 ATCAACGCTCCATCTTGT 1788
Score = 174 bits (192), Expect = 4e-38
Identities = 162/206 (79%), Gaps = 0/206 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || ||||| || || || || || ||||| || || || || || |||||||||||
Sbjct 1811 CAGATCTTCGTAAAGACCCTTACCGGCAAAACTATTACTCTTGAAGTCGAAAGCTCAGAT 1870
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|||||||| ||||| ||| || || || || ||||| || ||||| || |||||||||
Sbjct 1871 ACCATCGACAACGTTAAAAGCAAAATCCAAGATAAAGAGGGTATCCCACCAGACCAGCAA 1930
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
|||||||||||||| ||||||||||| || || || | ||||| |||| || || ||
Sbjct 1931 CGACTTATCTTCGCAGGAAAACAGCTTGAGGACGGCCGAACTCTCTCCGACTACAATATC 1990
Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129
||||||||||| ||||| || |||||
Sbjct 1991 CAAAAAGAATCCACACTTCACCTTGT 2016
Score = 150 bits (166), Expect = 4e-31
Identities = 161/213 (76%), Gaps = 0/213 (0%)
Strand=Plus/Plus
Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983
|| || |||||||||||||| || || ||||| ||||| || ||||| || ||||| |||
Sbjct 2039 CAGATCTTCGTGAAAACTCTGACTGGCAAAACCATCACACTGGAGGTCGAGAGCTCTGAC 2098
Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043
|| || || ||||| ||| || || || ||||| ||||| ||||| || || |||||
Sbjct 2099 ACAATTGACAACGTAAAAAGCAAAATCCAAGACAAGGAAGGGATCCCACCAGATCAGCAG 2158
Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103
||||||||||| || || |||||||| |||||||| | || ||| | || || ||| |
Sbjct 2159 CGACTTATCTTTGCTGGTAAACAGCTAGAAGATGGTCGAACGCTTTCGGACTACAACATT 2218
Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136
|| || || || || ||| | || ||||||
Sbjct 2219 CAGAAGGAGAGCACTCTCCATTTGGTGTTGAGA 2251
Score = 86.0 bits (94), Expect = 2e-11
Identities = 96/127 (76%), Gaps = 1/127 (1%)
Strand=Plus/Plus
Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064
|| ||||| ||||| || || |||||||| ||||| || || |||||||||||||| ||
Sbjct 1330 AAAATTCAAGACAAGGAGGGTATCCCTCCTGACCAACAGCGCCTTATCTTCGCCGGCAAG 1389
Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124
||||| || || || | || || ||||||| || |||| || || || || || ||
Sbjct 1390 CAGCTTGAGGACGGTCGTACCCTGTCCGATTACAATATCCAGAAGGAGTCTACCCTCCA- 1448
Query 178125 CTTGTTT 178131
|||| ||
Sbjct 1449 CTTGGTT 1455
>seq1424
Length=24560
Score = 134 bits (148), Expect = 3e-26
Identities = 137/179 (77%), Gaps = 0/179 (0%)
Strand=Plus/Plus
Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989
||||| || || ||||| || || || ||||| || ||||| || | |||||||||
Sbjct 23629 TTCGTCAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGACACCATC 23688
Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049
|| || ||||| || || ||||| || || || ||||| || |||||||| ||| |
Sbjct 23689 GACAATGTCAAGAGTAAAATCCAGGATAAGGAGGGTATCCCACCCGACCAGCAGCGATTG 23748
Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108
||||||||||| |||||||| || ||||| |||| ||| |||||||||| |||||||
Sbjct 23749 ATCTTCGCCGGCAAACAGCTTGAGGATGGCCGGACGCTTAGCGATTATAACATCCAAAA 23807
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1203662661050136
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |