Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_033775.1 Length=376207 Score E Sequences producing significant alignments: (Bits) Value seq819 188 2e-42 seq1424 134 3e-26 >seq819 Length=4427 Score = 188 bits (208), Expect = 2e-42 Identities = 162/198 (82%), Gaps = 2/198 (1%) Strand=Plus/Plus Query 177933 GTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATCGAG 177992 |||||||| ||||| || || || |||||| | ||||||||| ||||| |||||||| Sbjct 1592 GTGAAAACCCTCACTGGCAAGACCATCACCTTGGAGGTGGAATCTTCAGATACCATCGAC 1651 Query 177993 AACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATC 178052 ||||| || || || ||||| |||||||| ||||| ||||| |||||||| || ||| Sbjct 1652 AACGTGAAGAGCAAAATCCAGGATAAAGAAGGGATCCCCCCGGATCAGCAACGTCTGATC 1711 Query 178053 TTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTG-CCGATTATAACGTCCAAAAAGA 178111 ||||| ||||| |||||||||||||| | || |||| | ||||||||| |||||||||| Sbjct 1712 TTCGCTGGAAAGCAGCTCGAAGATGGCCGCAC-CTTGTCGGATTATAACATCCAAAAAGA 1770 Query 178112 ATCAACACTGCATCTTGT 178129 |||||| || |||||||| Sbjct 1771 ATCAACGCTCCATCTTGT 1788 Score = 174 bits (192), Expect = 4e-38 Identities = 162/206 (79%), Gaps = 0/206 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || ||||| || || || || || ||||| || || || || || ||||||||||| Sbjct 1811 CAGATCTTCGTAAAGACCCTTACCGGCAAAACTATTACTCTTGAAGTCGAAAGCTCAGAT 1870 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 |||||||| ||||| ||| || || || || ||||| || ||||| || ||||||||| Sbjct 1871 ACCATCGACAACGTTAAAAGCAAAATCCAAGATAAAGAGGGTATCCCACCAGACCAGCAA 1930 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 |||||||||||||| ||||||||||| || || || | ||||| |||| || || || Sbjct 1931 CGACTTATCTTCGCAGGAAAACAGCTTGAGGACGGCCGAACTCTCTCCGACTACAATATC 1990 Query 178104 CAAAAAGAATCAACACTGCATCTTGT 178129 ||||||||||| ||||| || ||||| Sbjct 1991 CAAAAAGAATCCACACTTCACCTTGT 2016 Score = 150 bits (166), Expect = 4e-31 Identities = 161/213 (76%), Gaps = 0/213 (0%) Strand=Plus/Plus Query 177924 CAAATTTTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGAC 177983 || || |||||||||||||| || || ||||| ||||| || ||||| || ||||| ||| Sbjct 2039 CAGATCTTCGTGAAAACTCTGACTGGCAAAACCATCACACTGGAGGTCGAGAGCTCTGAC 2098 Query 177984 ACCATCGAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAA 178043 || || || ||||| ||| || || || ||||| ||||| ||||| || || ||||| Sbjct 2099 ACAATTGACAACGTAAAAAGCAAAATCCAAGACAAGGAAGGGATCCCACCAGATCAGCAG 2158 Query 178044 CGACTTATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTC 178103 ||||||||||| || || |||||||| |||||||| | || ||| | || || ||| | Sbjct 2159 CGACTTATCTTTGCTGGTAAACAGCTAGAAGATGGTCGAACGCTTTCGGACTACAACATT 2218 Query 178104 CAAAAAGAATCAACACTGCATCTTGTTTTGAGA 178136 || || || || || ||| | || |||||| Sbjct 2219 CAGAAGGAGAGCACTCTCCATTTGGTGTTGAGA 2251 Score = 86.0 bits (94), Expect = 2e-11 Identities = 96/127 (76%), Gaps = 1/127 (1%) Strand=Plus/Plus Query 178005 AAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTTATCTTCGCCGGAAAA 178064 || ||||| ||||| || || |||||||| ||||| || || |||||||||||||| || Sbjct 1330 AAAATTCAAGACAAGGAGGGTATCCCTCCTGACCAACAGCGCCTTATCTTCGCCGGCAAG 1389 Query 178065 CAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAAAGAATCAACACTGCAT 178124 ||||| || || || | || || ||||||| || |||| || || || || || || Sbjct 1390 CAGCTTGAGGACGGTCGTACCCTGTCCGATTACAATATCCAGAAGGAGTCTACCCTCCA- 1448 Query 178125 CTTGTTT 178131 |||| || Sbjct 1449 CTTGGTT 1455 >seq1424 Length=24560 Score = 134 bits (148), Expect = 3e-26 Identities = 137/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Plus Query 177930 TTCGTGAAAACTCTCACAGGAAAAACGATCACCCTCGAGGTGGAAAGCTCAGACACCATC 177989 ||||| || || ||||| || || || ||||| || ||||| || | ||||||||| Sbjct 23629 TTCGTCAAGACCCTCACGGGCAAGACCATCACTCTTGAGGTCGAGTCCAGCGACACCATC 23688 Query 177990 GAGAACGTCAAACAAAAGATTCAGGACAAAGAAGGAATCCCTCCGGACCAGCAACGACTT 178049 || || ||||| || || ||||| || || || ||||| || |||||||| ||| | Sbjct 23689 GACAATGTCAAGAGTAAAATCCAGGATAAGGAGGGTATCCCACCCGACCAGCAGCGATTG 23748 Query 178050 ATCTTCGCCGGAAAACAGCTCGAAGATGGAAGGACTCTTGCCGATTATAACGTCCAAAA 178108 ||||||||||| |||||||| || ||||| |||| ||| |||||||||| ||||||| Sbjct 23749 ATCTTCGCCGGCAAACAGCTTGAGGATGGCCGGACGCTTAGCGATTATAACATCCAAAA 23807 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1203662661050136