Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06-
09] 4,444 sequences; 29,708,924 total letters
Query= NC_033780.1
Length=144510
Score E
Sequences producing significant alignments: (Bits) Value
seq819 107 2e-18
seq1424 91.5 1e-13
>seq819
Length=4427
Score = 107 bits (118), Expect = 2e-18
Identities = 159/218 (73%), Gaps = 12/218 (6%)
Strand=Plus/Minus
Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710
||||||| ||| || |||||||||||||||||||| ||||| || || || || | ||
Sbjct 2247 AACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCATCT 2188
Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTC 41769
|| ||||| || || || || || || ||||| || || | |||| | || ||||||||
Sbjct 2187 TCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCT-TCCTTGTC 2129
Query 41770 CATGATTTTTTGC-TTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTT 41824
|| |||||| || ||| | | | ||||| ||| ||| ||||||| ||
Sbjct 2128 TTGGA--TTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCT---CTCGACCTCCAGTGTG 2074
Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862
|| ||||| || ||||| || || ||||| ||||||||
Sbjct 2073 ATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036
Score = 100 bits (110), Expect = 3e-16
Identities = 146/204 (72%), Gaps = 2/204 (1%)
Strand=Plus/Minus
Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695
|| || || ||||| | |||| || || || ||||||||| || || || |||||
Sbjct 1472 CCTCCACGGAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGAC 1413
Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755
||||| || |||| || ||||||||||||||||| || |||||||||||||| | ||
Sbjct 1412 AGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGGG 1353
Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814
| | |||||||| | ||| |||| | | ||| || | | ||| || | ||||| ||
Sbjct 1352 ATACCCTCCTTGT-CTTGAATTTTGGACTTAACCGCGTCGATAGTATCACCTGACTCAAC 1294
Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838
|| | || || || || || ||
Sbjct 1293 GTCGAGTGTGATGGTCTTCCCGGT 1270
>seq1424
Length=24560
Score = 91.5 bits (100), Expect = 1e-13
Identities = 131/183 (72%), Gaps = 4/183 (2%)
Strand=Plus/Minus
Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732
|||| || |||||||| ||| || || || | || || ||||| ||||||||||| |
Sbjct 23809 CCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGA 23750
Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790
||| ||||| ||||| | || | | |||||| ||| |||||| ||| || |
Sbjct 23749 TCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGT 23690
Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850
|| | |||||||| ||||| ||||| | || || || || ||||| || ||||| ||
Sbjct 23689 CG--ATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGAC 23632
Query 41851 GAA 41853
|||
Sbjct 23631 GAA 23629
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 462278319012800
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |