Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Emmonsia_20sp._20CAC-2015a_20[genbank_20GCA_5F001660665.1_202016-06- 09] 4,444 sequences; 29,708,924 total letters Query= NC_033780.1 Length=144510 Score E Sequences producing significant alignments: (Bits) Value seq819 107 2e-18 seq1424 91.5 1e-13 >seq819 Length=4427 Score = 107 bits (118), Expect = 2e-18 Identities = 159/218 (73%), Gaps = 12/218 (6%) Strand=Plus/Minus Query 41651 AACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCG 41710 ||||||| ||| || |||||||||||||||||||| ||||| || || || || | || Sbjct 2247 AACACCAAATGGAGAGTGCTCTCCTTCTGAATGTTGTAGTCCGAAAGCGTTCGACCATCT 2188 Query 41711 TCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTC-CGCGGGAACGCTCTCCTTGTC 41769 || ||||| || || || || || || ||||| || || | |||| | || |||||||| Sbjct 2187 TCTAGCTGTTTACCAGCAAAGATAAGTCGCTGCTGATCTGGTGGGATCCCT-TCCTTGTC 2129 Query 41770 CATGATTTTTTGC-TTCAACGACGAC-ACAGTGTC---GCTCGACTCCACCTCCACCGTT 41824 || |||||| || ||| | | | ||||| ||| ||| ||||||| || Sbjct 2128 TTGGA--TTTTGCTTTTTACGTTGTCAATTGTGTCAGAGCT---CTCGACCTCCAGTGTG 2074 Query 41825 ATCGTTTTACCCGTCAGCGTCTTTACGAAAATCTGCAT 41862 || ||||| || ||||| || || ||||| |||||||| Sbjct 2073 ATGGTTTTGCCAGTCAGAGTTTTCACGAAGATCTGCAT 2036 Score = 100 bits (110), Expect = 3e-16 Identities = 146/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 41636 CCGCCGCGTAGACGTAACACCAGATGCAGCGTGCTCTCCTTCTGAATGTTATAGTCGGAG 41695 || || || ||||| | |||| || || || ||||||||| || || || ||||| Sbjct 1472 CCTCCACGGAGACGGAGAACCAAGTGGAGGGTAGACTCCTTCTGGATATTGTAATCGGAC 1413 Query 41696 AGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATATCAGGCGCTGTTGGTCCGCGGGA 41755 ||||| || |||| || ||||||||||||||||| || |||||||||||||| | || Sbjct 1412 AGGGTACGACCGTCCTCAAGCTGCTTGCCGGCGAAGATAAGGCGCTGTTGGTCAGGAGGG 1353 Query 41756 ACGCTCTCCTTGTCCATGATTTTTTGCTTCAACGACGAC-ACAGTGTCGCTCGACTCCAC 41814 | | |||||||| | ||| |||| | | ||| || | | ||| || | ||||| || Sbjct 1352 ATACCCTCCTTGT-CTTGAATTTTGGACTTAACCGCGTCGATAGTATCACCTGACTCAAC 1294 Query 41815 CTCCACCGTTATCGTTTTACCCGT 41838 || | || || || || || || Sbjct 1293 GTCGAGTGTGATGGTCTTCCCGGT 1270 >seq1424 Length=24560 Score = 91.5 bits (100), Expect = 1e-13 Identities = 131/183 (72%), Gaps = 4/183 (2%) Strand=Plus/Minus Query 41673 CCTTCTGAATGTTATAGTCGGAGAGGGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAATA 41732 |||| || |||||||| ||| || || || | || || ||||| ||||||||||| | Sbjct 23809 CCTTTTGGATGTTATAATCGCTAAGCGTCCGGCCATCCTCAAGCTGTTTGCCGGCGAAGA 23750 Query 41733 TCAGGCGCTGTTGGTCCGCGGGAACGCTCTCCTTGTCCATGATTTTTTGCTT--CAACGA 41790 ||| ||||| ||||| | || | | |||||| ||| |||||| ||| || | Sbjct 23749 TCAATCGCTGCTGGTCGGGTGGGATACCCTCCTTATCCTGGATTTTACTCTTGACATTGT 23690 Query 41791 CGACACAGTGTCGCTCGACTCCACCTCCACCGTTATCGTTTTACCCGTCAGCGTCTTTAC 41850 || | |||||||| ||||| ||||| | || || || || ||||| || ||||| || Sbjct 23689 CG--ATGGTGTCGCTGGACTCGACCTCAAGAGTGATGGTCTTGCCCGTGAGGGTCTTGAC 23632 Query 41851 GAA 41853 ||| Sbjct 23631 GAA 23629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 462278319012800