Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_001973.1 Length=161046 Score E Sequences producing significant alignments: (Bits) Value seq11 219 4e-52 seq15 116 4e-21 seq3 111 2e-19 seq6 109 6e-19 >seq11 Length=1431289 Score = 219 bits (242), Expect = 4e-52 Identities = 324/451 (72%), Gaps = 6/451 (1%) Strand=Plus/Minus Query 116982 AGAAGGCCGAGTGGGCGCTGCGCTGGATCGCCGGCAGAGAGGCCGCCTTCGGCGAGCGCC 117041 |||||||||| ||||| || || |||||||||| || || | | |||| |||| Sbjct 758770 AGAAGGCCGACTGGGCTCTCCGATGGATCGCCGACAAGCAGTCGACTTTCGCTCAGCGTT 758711 Query 117042 TGGTGGCCTTCGCGGCCGTCGAGGGCGTCTTCTTTTCGGGCAGTTTCGCCGCCATATTTT 117101 || | |||||||| ||||||||||| ||||||| || |||||| |||| || | Sbjct 758710 TGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCT 758651 Query 117102 GGCTCAAGAAACGCGGCCTCATGCCCGGCCTGACTTTCAGCAACGAGCTCATCTCCAGGG 117161 |||||||||| ||||| |||||||||||| |||| ||| |||||||||||||||| | | Sbjct 758650 GGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAGCTCATCTCCCGCG 758591 Query 117162 ACGAGGGTCTGCATTGCGACTTTGCCTGTTTGCTGTTCAAGCATTTGGTGCAGCGACCGA 117221 |||||||||| || |||||| ||||| |||||||| || | | || || | Sbjct 758590 ACGAGGGTCTCCACACCGACTTCGCCTGCCTGCTGTTCTCCCACCTCAACAACCGCCCCA 758531 Query 117222 GCGCGGCG-CGCGTCAGGGAGATCGTCACCGACGCGGTCGCCATCGAGCAGCGCTTCCTC 117280 || | | | ||| ||||||| ||| ||||| ||| ||||||||| ||||| Sbjct 758530 GCAAGCAGATGATTCA-GGAGATCATCATGGACGCCGTCAAGATCGAGCAGGAGTTCCTG 758472 Query 117281 ACCGAAGCGCTGCCGGTGCG-TCTGCTGGGACTCAATTGCGAAAC-GATGTCGCAATACA 117338 ||||| || ||||| |||| || || || | || | |||| | ||| ||| |||| Sbjct 758471 ACCGAGGCCCTGCC-TTGCGCCCTCCTCGGCATGAACT-CGAACCTCATGAAGCAGTACA 758414 Query 117339 TCGAGTTCGTCGCCGACAGGCTGCTGCTCGAGCTGGTCGGCGCCAAGCACTACAACACGC 117398 ||||||||||||||||| | || || ||| || | | || ||| |||| | Sbjct 758413 TCGAGTTCGTCGCCGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTCTACCGGTCCG 758354 Query 117399 CCAACCCGCTGGACTTTATGAACCTCATCTC 117429 |||||||| | ||||||||| | |||||| Sbjct 758353 CCAACCCGTTCGACTTTATGGAGAACATCTC 758323 Score = 154 bits (170), Expect = 2e-32 Identities = 210/287 (73%), Gaps = 7/287 (2%) Strand=Plus/Minus Query 116636 ATGTGGCGCATGTACAAAAAGGCCGAGGCGTCGTTCTGGACCGTCGAGGAGGTGGACCTG 116695 || |||| |||||||| ||||||||||| || |||||||| | ||||||| | || || Sbjct 759187 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATCGATCTT 759128 Query 116696 TCCAAGGA-CACGAGCGACTGGGAGCGCT---TGAACGACAACGAGCGCCATTTCATCAA 116751 |||||||| | | | ||| ||| | | | ||||| | ||| | |||||| Sbjct 759127 TCCAAGGATCTCCA-CGATTGGAACAACAGAATCAACGAGGATGAGAAGTACTTCATCTC 759069 Query 116752 GCACGTGCTGGCCTTTTTCGCCGCCAGCGACGGCATCGTCAACGAGAATCTGGTCGAGCG 116811 ||| | || ||||| |||||||| ||||| |||||||||||||| || |||||||| Sbjct 759068 TCACATCCTTGCCTTCTTCGCCGCTTCGGACGGTATCGTCAACGAGAACCTTGTCGAGCG 759009 Query 116812 TTTC-GCTCAGGAGGTGCAGGTGGCCGAGGCGCGGTGCTTCTACGGCTTTCAGATCGCCA 116870 |||| || || |||| ||| | |||| || || ||||||||||| || |||||| | Sbjct 759008 TTTCAGCGGAG-AGGTTCAGATCCCCGAAGCTCGATGCTTCTACGGTTTCCAGATCATGA 758950 Query 116871 TGGAGAACGTGCACTCGGAAATGTATTCGACCCTCATCGACACGTAC 116917 |||||||| | ||||| || | || || ||||| ||||| ||| Sbjct 758949 TGGAGAACATCCACTCCGAGACCTACTCTCTTCTCATTGACACCTAC 758903 >seq15 Length=310649 Score = 116 bits (128), Expect = 4e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || |||||||| || || |||||||| || |||||| |||| || || | | | Sbjct 111000 ATGCAGATTTTCGTAAAGACCCTTACGGGCAAGACTATCACCCTCGAGGTGGAGTCTAGC 111059 Query 40750 GACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAG 40809 || | | | | | |||| || |||| ||||| || || || || | |||||| Sbjct 111060 GATACCATCGATAATGTCAAATCCAAGATTCAGGACAAGGAAGGAATTCCTCCCGACCAG 111119 Query 40810 CAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 40869 || || || |||| ||| ||||| ||||| || |||| || || || ||||||||| Sbjct 111120 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTTTCTGACTACAAC 111179 Query 40870 ATCCAGAAGGAGGCCACGCTGCATCTAGT 40898 |||||||||||| |||| || || || || Sbjct 111180 ATCCAGAAGGAGTCCACCCTTCACCTCGT 111208 >seq3 Length=5105224 Score = 111 bits (122), Expect = 2e-19 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 40689 AATGCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 |||| |||| ||||| || || || |||||||| ||||||||| |||| || || | Sbjct 833412 AATGTGAATAGCTTCGTTAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCT 833471 Query 40747 ACCGACAGCGTGCAAACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGAC 40806 |||||| | | | | ||||| || |||| ||||| || || || ||| | ||| Sbjct 833472 TCCGACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGAATTCCCCCTGAC 833531 Query 40807 CAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 40866 ||||| || || |||| ||| || || ||||| || || | || |||||| |||||| Sbjct 833532 CAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGGACCCTCTCTGACTAC 833591 Query 40867 AACATCCAGAAGG 40879 ||||||||||||| Sbjct 833592 AACATCCAGAAGG 833604 >seq6 Length=3640113 Score = 109 bits (120), Expect = 6e-19 Identities = 148/204 (73%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 |||||||| || || || || ||||| || || |||||||| |||| || ||| | | Sbjct 611839 ATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACCATCACACTCGAGGTGGAATCTTCG 611780 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | | |||| | ||| || || | ||||| ||||| ||||| | ||||| Sbjct 611779 GATACCATTGACAACG-TGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCA 611721 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| || |||| ||| || || ||| |||| || | || || | | ||||||||| Sbjct 611720 GCAACGTCTTATCTTCGCCGGTAAGCAGTTGGAGGATGGCCGAACTTTGAGCGACTACAA 611661 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||||||||||||| | || || || Sbjct 611660 CATCCAGAAGGAGTCGACTCTTCA 611637 Score = 105 bits (116), Expect = 7e-18 Identities = 145/200 (73%), Gaps = 2/200 (1%) Strand=Plus/Minus Query 40700 TCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACCGACAGCGTGC 40759 |||| || || || || ||||| ||||||||| | || ||||| | |||||| | | Sbjct 612285 TCGTCAAGACCCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCCGACACCATTG 612226 Query 40760 A-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCAGCAACGACTC 40818 | |||| ||||| || || | || || ||||||||||| | |||||||| ||| | Sbjct 612225 ACAACG-TCAAGTCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGCGATTG 612167 Query 40819 ATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAACATCCAGAAG 40878 |||| || || || ||||| || || | || ||||| ||||||||||| |||||| Sbjct 612166 ATCTTTGCTGGTAAGCAGCTCGAGGATGGCCGTACCCTTTCGGACTACAACATTCAGAAG 612107 Query 40879 GAGGCCACGCTGCATCTAGT 40898 ||| |||| || || || || Sbjct 612106 GAGTCCACTCTCCACCTTGT 612087 Score = 100 bits (110), Expect = 3e-16 Identities = 148/207 (71%), Gaps = 2/207 (1%) Strand=Plus/Minus Query 40687 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCC 40746 || ||||| || ||||| || || || || ||||| |||||||| | || ||||| | Sbjct 612605 AAGATGCAGATTTTCGTTAAGACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCT 612546 Query 40747 ACCGACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGA 40805 |||||| | | |||| | ||| || || | ||||| || || || || | || Sbjct 612545 TCCGACACTATCGACAACGTT-AAGTCGAAGATCCAGGACAAGGAAGGTATTCCTCCTGA 612487 Query 40806 CCAGCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 40865 |||||| ||| | || | ||| || || || || || |||| ||||| ||| |||||| Sbjct 612486 CCAGCAGCGATTGATTTTCGCTGGTAAGCAACTCGAGGACGGTCGCACTCTCTCCGACTA 612427 Query 40866 CAACATCCAGAAGGAGGCCACGCTGCA 40892 |||||||||||||||| | || || || Sbjct 612426 CAACATCCAGAAGGAGTCTACCCTCCA 612400 Score = 95.1 bits (104), Expect = 1e-14 Identities = 145/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 40690 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAAGCCACC 40749 ||||| || ||||| || || | ||||| || || || || |||| |||||| | || Sbjct 612067 ATGCAGATCTTCGTCAAGACCTTGACGGGTAAGACGATTACTCTCGAGGTCGAATCTTCC 612008 Query 40750 GACAGCGTGCA-AACGCTCAAGGAAAAAATTCTCGACAAAGAGGGCATCCCCGCGGACCA 40808 || | | | |||| ||||| || |||| ||||| ||||| ||||| | ||||| Sbjct 612007 GATACTATCGACAACG-TCAAGTCGAAGATTCAAGACAAGGAGGGTATCCCACCTGACCA 611949 Query 40809 GCAACGACTCATCTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAA 40868 |||||| ||||||| ||| || || ||| |||| || | || || | |||||| || Sbjct 611948 GCAACGTCTCATCTTCGCTGGAAAGCAGTTGGAAGATGGACGAACTTTGTCCGACTATAA 611889 Query 40869 CATCCAGAAGGAGGCCACGCTGCA 40892 ||| ||||| || |||| || || Sbjct 611888 CATTCAGAAAGAATCCACCCTTCA 611865 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 515219090515920