Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_002331.1 Length=178733 Score E Sequences producing significant alignments: (Bits) Value seq15 122 1e-22 seq6 98.7 1e-15 seq3 98.7 1e-15 >seq15 Length=310649 Score = 122 bits (134), Expect = 1e-22 Identities = 148/199 (74%), Gaps = 2/199 (1%) Strand=Plus/Minus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| |||| ||||| || |||| || |||||||| || ||||| Sbjct 111191 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 111132 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCG 43110 || || ||||||||||||| || | | ||||||||| ||| | || | ||||| Sbjct 111131 GATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCC-TGAATCTTGGATTTGACAT 111073 Query 43111 TCGCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | || ||||| || ||||| |||| ||||| || |||||||| || ||||||| Sbjct 111072 TATCGATGGTATCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTAAGGGTCTTTA 111013 Query 43171 CAAAGATTTGCATTTTTAC 43189 | || || ||||| |||| Sbjct 111012 CGAAAATCTGCATGATTAC 110994 >seq6 Length=3640113 Score = 98.7 bits (108), Expect = 1e-15 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || || ||| || | || || | ||||||||| ||||| Sbjct 611648 CTCCTTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAA 611707 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || || || |||||||| | ||| | | |||||||||| ||| || || | ||| Sbjct 611708 GATAAGACGTTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCA-CGT 611766 Query 43112 CGCCACCG-TGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | || | | || |||||||| |||| |||||||| || || || || ||||| | Sbjct 611767 TGTCAATGGTATCCGAAGATTCCACCTCGAGTGTGATGGTCTTTCCGGTGAGGGTCTTGA 611826 Query 43171 CAAAGATTTGCAT 43183 ||||||||||||| Sbjct 611827 CAAAGATTTGCAT 611839 Score = 95.1 bits (104), Expect = 1e-14 Identities = 131/181 (72%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| ||||| ||||| || | || || || | || || |||||||||||||| || Sbjct 612104 CTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCGAGCTGCTTACCAGCAAA 612163 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||||| || | || |||||| ||| ||| || |||| ||| Sbjct 612164 GATCAATCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTCGACTTGA-CGT 612222 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || || | |||||||| ||||| || || ||||| | Sbjct 612223 TGTCAATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTGA 612282 Query 43171 C 43171 | Sbjct 612283 C 612283 Score = 95.1 bits (104), Expect = 1e-14 Identities = 140/196 (71%), Gaps = 2/196 (1%) Strand=Plus/Plus Query 42992 CTCCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAA 43051 |||||| || || ||||| || | ||||| || |||| || || |||||||||||||| Sbjct 612411 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAGTTGCTTACCAGCGAA 612470 Query 43052 TATGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTGTTTGAGCGT 43111 || | |||||||||||| | || | | ||||||||| || | || | | | ||| Sbjct 612471 AATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCC-TGGATCTTCGACTTAACGT 612529 Query 43112 CG-CCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTA 43170 | | | |||||| || || || || | |||||||| ||||| || || ||||| | Sbjct 612530 TGTCGATAGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAA 612589 Query 43171 CAAAGATTTGCATTTT 43186 | || || ||||| || Sbjct 612590 CGAAAATCTGCATCTT 612605 >seq3 Length=5105224 Score = 98.7 bits (108), Expect = 1e-15 Identities = 133/183 (73%), Gaps = 2/183 (1%) Strand=Plus/Minus Query 42994 CCTTTTGAATATTGTAATCAGCCAGAGTCCGCTCGTCATCTAGCTGCTTACCAGCGAATA 43053 |||| || || ||||| |||| || ||||| | || || |||||||| |||||||| | Sbjct 833604 CCTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGA 833545 Query 43054 TGAGTCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATTTTTTG-TTTGAGCGTC 43112 | || ||||||||||| | || | | ||||||||| ||| | || | |||| | Sbjct 833544 TCAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCC-TGAATCTTGGACTTGACATTG 833486 Query 43113 GCCACCGTGTCGCTCGATTCCACATCGACCGTGATGGTTTTGCCCGTTAGCGTCTTTACA 43172 | | |||||| || ||||| |||| |||||||| |||||||| || ||||| || Sbjct 833485 TCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACG 833426 Query 43173 AAG 43175 ||| Sbjct 833425 AAG 833423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 571817478488760