Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_002593.1 Length=100999 Score E Sequences producing significant alignments: (Bits) Value seq6 102 5e-17 seq15 93.3 3e-14 >seq6 Length=3640113 Score = 102 bits (112), Expect = 5e-17 Identities = 152/213 (71%), Gaps = 2/213 (1%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || |||| ||| | ||| || ||||| |||||||||||| || ||| | || Sbjct 611628 AGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCC 611687 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTC-GACGGGCACGCTCTCCTTGTC 34296 ||||||||||| || ||||| || || || |||||||| | |||| | | ||||||||| Sbjct 611688 TCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGGG-ATACCCTCCTTGTC 611746 Query 34297 GGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGT 34356 ||||| ||| | | | | || | ||| | ||||| || || | |||||||| Sbjct 611747 CTGGATCTTGCTCTTCACGTTGTCAATGGTATCCGAAGATTCCACCTCGAGTGTGATGGT 611806 Query 34357 TTTGCCGGTGAGAGTTTTCACAAAGATCTGCAT 34389 || |||||||| || || |||||||| ||||| Sbjct 611807 CTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 611839 Score = 95.1 bits (104), Expect = 8e-15 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Plus Query 34198 TTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAA 34257 ||||||||| ||||| |||||||||| || | || ||||||||||| || ||||| Sbjct 611876 TTCTTTCTGAATGTTATAGTCGGACAAAGTTCGTCCATCTTCCAACTGCTTTCCAGCGAA 611935 Query 34258 AATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATC 34317 ||||| || |||||||| || | | ||||||||| ||||| ||| | | Sbjct 611936 GATGAGACGTTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTCGACTTGACGTT 611995 Query 34318 GGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCAC 34377 | | || | ||||| |||||||| || | || || || || || || | || || || Sbjct 611996 GTCGATAGTATCGGAAGATTCGACCTCGAGAGTAATCGTCTTACCCGTCAAGGTCTTGAC 612055 Query 34378 AAAGATCTGCAT 34389 ||||||||||| Sbjct 612056 GAAGATCTGCAT 612067 Score = 93.3 bits (102), Expect = 3e-14 Identities = 158/229 (69%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 34162 TCCGCCGCGCAGCCTCAGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGA 34221 ||| || || || | || |||| ||| | ||| || ||||| |||||||||||||| Sbjct 612375 TCCACCACGGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 612434 Query 34222 CAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGG 34281 || || |||| || | ||||| || |||||||| | ||||||||||| || Sbjct 612435 GAGAGTGCGACCGTCCTCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAGG 612494 Query 34282 CACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGAC 34341 | | |||||||| ||||| ||| | | | | || | |||| || ||||| Sbjct 612495 AATACCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATAGTGTCGGAAGACTCGAC 612554 Query 34342 GTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACAAAGATCTGCATC 34390 || | |||||||| |||||||| || || || || || ||||||||| Sbjct 612555 CTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAAATCTGCATC 612603 Score = 82.4 bits (90), Expect = 5e-11 Identities = 138/200 (69%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34178 AGCACCAGGTGTAAAGTACTTTCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCG 34237 || || ||||| | ||| || ||||| ||||||||||| || || |||| | || Sbjct 612084 AGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATCC 612143 Query 34238 TCCAACTGCTTGCCTGCGAAAATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCG 34297 || | |||||| || || || || | |||||||||||| || | || |||||| || Sbjct 612144 TCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCC 612203 Query 34298 GCTATCTTTTGCTTTAGATCGGCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTT 34357 ||||| ||| | | | | || | |||| || ||||| || | |||||||| Sbjct 612204 TGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTC 612263 Query 34358 TTGCCGGTGAGAGTTTTCAC 34377 |||||||| || || || || Sbjct 612264 TTGCCGGTAAGGGTCTTGAC 612283 >seq15 Length=310649 Score = 93.3 bits (102), Expect = 3e-14 Identities = 135/191 (71%), Gaps = 0/191 (0%) Strand=Plus/Minus Query 34199 TCTTTCTGTATGTTGTAGTCGGACAGCTGACGGTCGTCGTCCAACTGCTTGCCTGCGAAA 34258 || ||||| ||||||||||| || || |||| |||| || | ||||||||| ||||| Sbjct 111190 TCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAG 111131 Query 34259 ATGAGCCGCTGCTGGTCGACGGGCACGCTCTCCTTGTCGGCTATCTTTTGCTTTAGATCG 34318 || || |||||||||||| || | | |||||||| ||||| || | || Sbjct 111130 ATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGAATCTTGGATTTGACATTA 111071 Query 34319 GCTATCGAATCGGTCGATTCGACGTCCACCGTGATGGTTTTGCCGGTGAGAGTTTTCACA 34378 | || | |||| | || || || || | ||||| || ||||| || || || || || Sbjct 111070 TCGATGGTATCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTAAGGGTCTTTACG 111011 Query 34379 AAGATCTGCAT 34389 || |||||||| Sbjct 111010 AAAATCTGCAT 111000 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 323071933063520