Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_003102.1 Length=139342 Score E Sequences producing significant alignments: (Bits) Value seq11 334 7e-87 seq6 125 6e-24 seq15 105 6e-18 seq3 87.8 2e-12 >seq11 Length=1431289 Score = 334 bits (370), Expect = 7e-87 Identities = 647/950 (68%), Gaps = 6/950 (1%) Strand=Plus/Minus Query 23027 GAGGCAAGATTGCATACGGCCACCTCGTCTTTGGACGTGTACTCTACAATTTCGGTACAT 23086 || || || ||||| || || ||||| || | || |||||| | ||| ||||| || Sbjct 452326 GAAGCCAGGTTGCACACAGCGACCTCATCAGGAGCCGAGTACTCAATAATCTCGGTGCAG 452267 Query 23087 AGATTGCTACACTTTATCGTGCCCAAATTGCTCTGGTTGCTTTTTCGATTGCACGAATCC 23146 || || || || || |||| || |||||||||| || || ||||| |||| Sbjct 452266 AGGTTAGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCC 452207 Query 23147 TTGTAGAGCATGTACGGCGTGCCCGTCTCGACCTGCGACTCGATGATCGCTCGCCACATA 23206 ||||| |||||| | || | || ||||| ||| | ||||| ||| || ||| | Sbjct 452206 TTGTAAAGCATGAATGGGTTACCAGTCTCAGTCTGAGCCTCGAGGATGGCATACCAAAGT 452147 Query 23207 GTCTGAGCGTGAACACGTCGCACGTAC-CTGCCTTCTTCCTCGTACTTTTGGTACAACGC 23265 |||| || | || | || || | | ||| || | |||||||| | ||||| || Sbjct 452146 TTCTGGGCCTTGAC-CTTCTGGCGGCCACGGCCCTCGGCTTCGTACTTCTCGTACAGAGC 452088 Query 23266 GTCAAATTCGGCACCGTAACAGTCGGCCAGGCCGGGCGATTGCATCGGACACATGAGACT 23325 || || || | ||||| ||| || ||||| || | | | ||||||||||| | Sbjct 452087 CTCGAACTCATCGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATGAGCGT 452028 Query 23326 CCACATTGA--GTCATTTTCAACGCGTCTCATAAAAAGATCCGGTATCCATAGAGCGTAG 23383 ||| || | || || ||||| || |||| |||||||| || ||||| ||||| | Sbjct 452027 CCA--TTCACCGTTCTTCTCAACACGCTTCATGAAAAGATCGGGAATCCAGAGAGCAAGG 451970 Query 23384 AACAGTTCGCGGGCGCGCACCTCCTCTTTGCCGGTGTTCTTTTTCAAATCCAAAAAGTCC 23443 || || ||||| ||||| || ||||| || ||| |||||| | |||||| || || Sbjct 451969 AAAAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTACGGAGATCCAAGAACTCG 451910 Query 23444 AACACGTCCGCATGCCACGGCTCGAGGTAAACGGCAAACGCGCCCGGTCTCTTATTGCCG 23503 || || |||| ||||||||||||||||| | |||||| || || |||||||| ||||| Sbjct 451909 AAAACATCCGAGTGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGTCTCTTGTTGCCA 451850 Query 23504 CCCTGATCGACGTAACGGGCCGTGTTGTTGTACACTCTTAGCATCGGCACGAGACCGTTG 23563 ||||| || ||||| | ||||||||||||| | || | ||||| || || | |||||| Sbjct 451849 CCCTGGTCAACGTATCTGGCCGTGTTGTTGAAGACACGAAGCATAGGTACAATACCGTTA 451790 Query 23564 GACGCGCCGCCTACGCCCGCCACACTCGAACCTTTTGCTCGAACGTTGTGAACGTGGAAA 23623 || | ||| || || | || || | | ||| | |||||||| || | Sbjct 451789 GAAGTACCGTTGGTACCGGCAATGTAAGATCCGGTAGATCGGATACGGTGAACGTTGAGA 451730 Query 23624 CCTATGCCTCCGCCCGATTTCGATATCATCGCGCATTGTTTCAGAGTGTCGTAGATGCCC 23683 || || || || || || || ||||| || || || || ||||| ||||| ||| Sbjct 451729 CCAATACCACCCGCCATCTTGGAGATCATAGCACAAGTCTTGAGGGTGTCATAGATACCC 451670 Query 23684 TCGATGCTGTCCTCTTTGGTCGCGACCAAGAAACACGAAGACATTTGCGCTTTGGGCGTA 23743 || |||||||| || || | | || | |||||| || || | || || | ||| ||| Sbjct 451669 TCAATGCTGTCATCCTTCATGTCTACAAGGAAACAAGAGGAAAGCTGAGCCTGGGGGGTA 451610 Query 23744 GCGGCCGAGAACAGTGTCGGGCTGGCGTGCGTAAAGTATCCATTCGACATTAGATTGTAC 23803 |||| ||| || || ||| |||||| || || ||| | ||||| |||||||| Sbjct 451609 CCGGCGTTGAAAAGGGTGGGGGAGGCGTGGGTGAAATATTTGCTGGACATGAGATTGTAT 451550 Query 23804 GTGTCGATGGCGGCATCAATGTCCTCTCCGTGTATACCGATGGCGACGCGCATCATCATG 23863 || || ||| | |||| ||| || || ||||||| ||| || ||||| |||||| Sbjct 451549 GTCTCAATGACCTTTTCAACGTCGTCACCCCAGATACCGACGGCAACACGCATGATCATG 451490 Query 23864 TATTGAGGTCTCTCGACCGTGACGCCGTTAATTTTGAACAGATATGAACGTTGCATCGTT 23923 | || || | |||| | | ||| || | |||| || ||||| || | || || Sbjct 451489 TGCTGCGGCCGCTCGGCAATTTTGCCATTGAGCTTGAGAAGGTATGATCGCTCCAAAGTC 451430 Query 23924 TTAAATCCAAAATAGTCATAGTTAAAGTCACGATCGTGCACTATGGCCGA 23973 || || ||||| || | ||||| ||||| || |||| || || ||||| Sbjct 451429 TTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGTAGACGATTGCCGA 451380 Score = 145 bits (160), Expect = 7e-30 Identities = 357/535 (67%), Gaps = 20/535 (4%) Strand=Plus/Minus Query 57903 CCCGCGATCGCCAAGAAGGCAGAGTGGTCAATCAAATGGATA----AAAAGCGCCACGGC 57958 ||||| ||| ||||||||| || ||| | || |||||| | |||| | | Sbjct 758783 CCCGCTATCCGCAAGAAGGCCGACTGGGCTCTCCGATGGATCGCCGACAAGCA----GTC 758728 Query 57959 CACGTTCGCCGAGAGGCTAATCGCGTTCGCCGCCGTCGAAGGTATATTCTTTTCGGGCAG 58018 || ||||| || | | ||||| |||||||||||||| ||||| ||||| || Sbjct 758727 GACTTTCGCTCAGCGTTTGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGC 758668 Query 58019 CTTTGCGGCAATATTTTGGATGAAGAAACGCGGCCTGATGCCCGGCCTGACGTTTAGCAA 58078 ||| || | || || ||| | ||||| ||||| || ||||||||| |||| || ||| Sbjct 758667 CTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAA 758608 Query 58079 CGAGTTGATATCGCGCGACGAGGGTCTCCATACTGATTTTGCGTGCCTAATGTACTCTCA 58138 |||| | || || ||||||||||||||||| || || || || ||||| ||| ||| || Sbjct 758607 CGAGCTCATCTCCCGCGACGAGGGTCTCCACACCGACTTCGCCTGCCTGCTGTTCTCCCA 758548 Query 58139 CATTGTCAATAAACCGACGC-GGGATCGCATCTT---GGACATTATCACCGAGGCGGTCG 58194 | |||| ||||| | | | | | || | ||| || |||| || || ||| Sbjct 758547 C---CTCAA-CAACCGCCCCAGCAAGCAGATGATTCAGGAGATCATCATGGACGCCGTCA 758492 Query 58195 CGATCGAAAATGAGTTTGTCACCGAAGCCCTACCGGTGGCCATGCTCGGTATGAACAATG 58254 |||||| | ||||| | ||||| ||||| || ||| | ||||| |||||| Sbjct 758491 AGATCGAGCAGGAGTTCCTGACCGAGGCCCTGCCTTGCGCCCTCCTCGGCATGAACTCGA 758432 Query 58255 ATTTGATGTCAAAGTACATTGAGTTTGTTGCCGACAGACTTTTGCTCGAACT--GATTGG 58312 | | ||| ||||||| ||||| || |||||| | || | ||| || | | Sbjct 758431 ACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGTCGCCCTCGGCAACG 758372 Query 58313 AGAGCGTCATTACAACACGAAAAATCCGTTTGATTTTATGAATCTGATCTCGCTCGAGGG 58372 ||| ||| ||| | || ||||| || |||||| | ||||| |||| || Sbjct 758371 AGAAGGTC--TACCGGTCCGCCAACCCGTTCGACTTTATGGAGAACATCTCTCTCGGCGG 758314 Query 58373 CAAGACAAACTTTTTCGaaaaaaaaGTTAGCGAATATCAAAAATACGGCGTGATG 58427 |||||| ||||| ||||| || || |||| || || || |||||| ||| Sbjct 758313 CAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCAGAAGGCCGGCGTCATG 758259 >seq6 Length=3640113 Score = 125 bits (138), Expect = 6e-24 Identities = 157/213 (74%), Gaps = 2/213 (1%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 ||||| || ||||| ||||| |||| || || ||||| || |||| || ||| | ||| Sbjct 612067 ATGCAGATCTTCGTCAAGACCTTGACGGGTAAGACGATTACTCTCGAGGTCGAATCTTCC 612008 Query 31253 GACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAG 31312 || | | |||| | ||||| || || |||||||| || | || || |||||| Sbjct 612007 GATACTATCGACAACGTCAAGTCGAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAG 611948 Query 31313 CAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGA-CTATGAGCGATTATAA 31371 || ||||| || |||||||| || ||||||||||| | | || || || ||| ||||| Sbjct 611947 CAACGTCTCATCTTCGCTGGAAAGCAGTTGGAAGA-TGGACGAACTTTGTCCGACTATAA 611889 Query 31372 CATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 |||||| |||||||| || ||||| |||| || Sbjct 611888 CATTCAGAAAGAATCCACCCTTCACTTGGTCCT 611856 Score = 102 bits (112), Expect = 7e-17 Identities = 154/216 (71%), Gaps = 6/216 (3%) Strand=Plus/Minus Query 31193 ATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCC 31252 |||||||| || || ||||| || || || || || ||||| |||| || ||| | || Sbjct 611839 ATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACCATCACACTCGAGGTGGAATCTTCG 611780 Query 31253 GACAGTGTCGAAACGGTCAAACAGAG-AATAGC--GGACAAGGAAGGCGTGCCGCCCGAC 31309 || | | || | || || ||| || | | ||||||||| || | ||||| ||| Sbjct 611779 GATACCATTGACAACGTGAA---GAGCAAGATCCAGGACAAGGAGGGTATCCCGCCTGAC 611723 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 ||||| ||||| || ||||| || || |||||||| || ||| ||||||| || Sbjct 611722 CAGCAACGTCTTATCTTCGCCGGTAAGCAGTTGGAGGATGGCCGAACTTTGAGCGACTAC 611663 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACTT 31405 ||||| || || || ||||||||||| |||| ||| Sbjct 611662 AACATCCAGAAGGAGTCGACTCTTCACTTGGTTCTT 611627 Score = 91.5 bits (100), Expect = 1e-13 Identities = 149/215 (69%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 31190 AACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCG 31249 || ||||| |||||||| ||||| || || ||||| || ||||| | || || || | Sbjct 612605 AAGATGCAGATTTTCGTTAAGACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCT 612546 Query 31250 TCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGAC 31309 ||||||| | |||| | || || || || |||||||||||| | || || ||| Sbjct 612545 TCCGACACTATCGACAACGTTAAGTCGAAGATCCAGGACAAGGAAGGTATTCCTCCTGAC 612486 Query 31310 CAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTAT 31369 |||||||| | || |||||||| || || | || ||| | ||| | ||| || Sbjct 612485 CAGCAGCGATTGATTTTCGCTGGTAAGCAACTCGAGGACGGTCGCACTCTCTCCGACTAC 612426 Query 31370 AACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || || || |||| || Sbjct 612425 AACATCCAGAAGGAGTCTACCCTCCACTTGGTCCT 612391 >seq15 Length=310649 Score = 105 bits (116), Expect = 6e-18 Identities = 153/216 (71%), Gaps = 0/216 (0%) Strand=Plus/Plus Query 31189 AAACATGCAAATTTTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACC 31248 || |||||| |||||||||||||| || || ||||| || |||||| |||| || || | Sbjct 110996 AATCATGCAGATTTTCGTAAAGACCCTTACGGGCAAGACTATCACCCTCGAGGTGGAGTC 111055 Query 31249 GTCCGACAGTGTCGAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGA 31308 ||| | |||| | |||||| | || |||||||||||| | || ||||| Sbjct 111056 TAGCGATACCATCGATAATGTCAAATCCAAGATTCAGGACAAGGAAGGAATTCCTCCCGA 111115 Query 31309 CCAGCAGCGTCTAATATTCGCTGGCAAACAGTTGGAAGACTCTATGACTATGAGCGATTA 31368 |||||||||||| || ||||| ||||| ||| | || ||| ||| | || || Sbjct 111116 CCAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTTTCTGACTA 111175 Query 31369 TAACATTCAAAAAGAATCGACTCTTCATCTGGTACT 31404 ||||| || || || || || ||||| || || || Sbjct 111176 CAACATCCAGAAGGAGTCCACCCTTCACCTCGTCCT 111211 >seq3 Length=5105224 Score = 87.8 bits (96), Expect = 2e-12 Identities = 107/146 (73%), Gaps = 0/146 (0%) Strand=Plus/Plus Query 31202 TTCGTAAAGACTCTGACAGGCAAAACGATCACCGTCGACGTTGAACCGTCCGACAGTGTC 31261 ||||| ||||| ||||| ||||| || |||||| |||| || || | ||||||| | Sbjct 833424 TTCGTTAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCTTCCGACACCATT 833483 Query 31262 GAAACGGTCAAACAGAGAATAGCGGACAAGGAAGGCGTGCCGCCCGACCAGCAGCGTCTA 31321 || | ||||| | || |||||||||||| | || || |||||||||||||| Sbjct 833484 GACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGAATTCCCCCTGACCAGCAGCGTCTG 833543 Query 31322 ATATTCGCTGGCAAACAGTTGGAAGA 31347 || |||||||| || ||| | || || Sbjct 833544 ATCTTCGCTGGAAAGCAGCTCGAGGA 833569 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 445766305274640