Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_003310.1 Length=196858 Score E Sequences producing significant alignments: (Bits) Value seq11 244 1e-59 >seq11 Length=1431289 Score = 244 bits (270), Expect = 1e-59 Identities = 1215/1911 (64%), Gaps = 58/1911 (3%) Strand=Plus/Minus Query 62036 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 62094 |||| |||| ||||| || ||||| || || | || ||||| ||||||||||||| Sbjct 453249 CTTGATCCACGGTGAACTGGATGGGCTGGGCGGCAGCTTGGGTACGGAGATAGTACATTC 453190 Query 62095 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 62154 |||| || |||||||| |||| || || ||||| ||||| | ||| | | | Sbjct 453189 CCGTCTTGAGACCGAGCTTCCAACCCGTGAAGTGCATGCTCGTGATCTTGCCCATAGTGG 453130 Query 62155 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 62214 | ||| || || || || | ||| || ||||||||||| || || | ||| |||| Sbjct 453129 GTTCTCTCATGTGAATGTTAAGAGACTGGGACTGATCGATGAACGCACCACGGTCGGCAG 453070 Query 62215 CCATTTTTATGATCGTCTTTTGTGCAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 62274 |||| | | | || || | |||||||||| || || || | | ||| |||| Sbjct 453069 CCATCTGGACAACGGTACGCTGAGAGATTTCCCAAACCGTCTTGTACAATGCCTTGATAT 453010 Query 62275 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTACCATAATCCTATTCTTGA 62331 | | |||| | | | | ||||| || || ||||| || | ||||| | ||||| | Sbjct 453009 CAGCAGGAATGCTGGGGATGTTCTGGATCGAACCACCTTCGGCAATAATGCGGTTCTTCA 452950 Query 62332 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGGTTAACTACTT 62391 | | ||| ||| | | ||| | | | || || |||||||| || | Sbjct 452949 TGTTGTCAGACCACAGACCCATGTCGACAAGGTCCTTGAGTAGCCAAGGGTTAACAACCT 452890 Query 62392 GGAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACCGACT 62451 |||| ||||| | | || | || | ||| || || ||| || || || | ||| Sbjct 452889 GGAACTCTCCCGCGAGGACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCAAAGCACT 452830 Query 62452 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 62511 |||| || ||||| ||||| | ||| || || ||||| || || ||||| ||||| | Sbjct 452829 CATTGTTACCCAAGATTTGCGAAGTGCTGGCTGTGGGCATGGGGGCGACCAACAAACTGT 452770 Query 62512 TTCTAAGACCGTA-TGTTCTGATTTTATCTTTTAGATGTTCCCAATTCCAAAGATCCGAC 62570 | | | ||||| || | |||| | | |||||| ||||| | ||| ||||| | Sbjct 452769 TACGGACACCGTGCTGCT-TGATCTGCTGCTTTAGACTATCCCAGTCCCAGAGATCGGTG 452711 Query 62571 GGTACAACANNNNNNNNNNNATATTGTAGAATACCGTTACTGGCGTAC----GATCCTAC 62626 || ||| ||||| || ||||| |||| || || || | Sbjct 452710 GGCTTGACATCCCACATGTCGTATTGAAGGATACC----CTGGGAGACCGGGGAGCCCTC 452655 Query 62627 ATATGTATCATATGGTCC---TTCCTTCTCAGCTAGTTTACAACTCGCCTCTAATGCACC 62683 || | | || || || |||||| ||| || | |||| || || | Sbjct 452654 GTAGCTGGCGTAGGGACCGAGTTCCTT---AGCGAGCTCCATGGACGCCGTCAAGGCGGC 452598 Query 62684 GTAATAAATGGTTTCAAAGATCTTCTTATTTAG-ATCTTGTGCTTCCGGGCTATCAAATG 62742 || || ||||| || ||||| | || || || | ||| || || || || |||| Sbjct 452597 GTGGTAGATGGTCTCGAAGATTTGTTTGTTAAGTAACTTA-GCCTCAGGCGATTCGAATG 452539 Query 62743 GATAATTTAAGAGA-ATAAACGCGTCCGCTAATCCTTGAACACCAATACCGATAGGTCTA 62801 | || | |||| | || || || || | ||||| ||||| | ||||| || | Sbjct 452538 GGTA-TCGGAGAGCTAGGAAAGCATCGGCAAGACCTTGGACACCCAATCCGATGGGACGG 452480 Query 62802 TGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 62861 || | | | || | | ||| || || | || || | || | || || || || Sbjct 452479 TGGCGCATGTTGCTGTTGCGAGCCTCAGGTACGGGGTAGTGGTTGACCTCAATGATCTTG 452420 Query 62862 TTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATCAAAT-CGCCC 62920 || ||||||| || | || | ||| || || | || || | ||||| | ||||| Sbjct 452419 TTCAGATTTCGCACGACCACCTGGACAACGTCGTGCAACTTCTGGAAATCGTAGGCGCCC 452360 Query 62921 A---TCTATT--ACAAAC-ATGTTCAATGCAACAGATGCCAGATTACACACGGCTACCTC 62974 | || | ||| || | | | || |||| || ||||| || ||||| || ||||| Sbjct 452359 GCGTTGTAGTCCACATACGAAGGT-AAGGCAAGGGAAGCCAGGTTGCACACAGCGACCTC 452301 Query 62975 ATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATAGTTCCTAA 63034 || || | ||| || | || ||||| ||||| || ||| || |||||||| | Sbjct 452300 ATCAGGAGCCGAGTACTCAATAATCTCGGTGCAGAGGTTAGAACTGCGAATAGTTCCCAG 452241 Query 63035 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAGT 63094 || | || || ||||| ||| || |||||| ||||| |||||||| ||||||| Sbjct 452240 GTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAATGGGTTACCAGT 452181 Query 63095 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA--TTATAGATTT 63151 ||| |||||| || | || || | ||| | | || | ||||| | || | | Sbjct 452180 CTCAGTCTGAGCCTCGAGGATGGCATACCAAA-GTTTCTGGGCCTTGACCTTCTGGCG-- 452124 Query 63152 GTATCTCCTTTCTCTTTCGTA--TAGAGTATACAATCGTTCGAACTCGTCTCCCCAAACA 63209 | | | || |||||| | ||| | | | |||||||| || || | || Sbjct 452123 GCCACGGCCCTCGGCTTCGTACTTCTCGTACAGAGCC--TCGAACTCATCGCCGTAGACG 452066 Query 63210 TTGTCCAATCTAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCACT 63269 | | | | ||| || || | |||||||| | || ||| || |||| | || || Sbjct 452065 TCAGCGAGGCCAGGGCACTCGTTGGGACACATGAGCGTCCATTCACCGTTCTTCTCAACA 452006 Query 63270 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTTGTTCTATGTTCC 63329 || ||||| || ||||| |||||||| ||||| | || ||||| | | | | |||| Sbjct 452005 CGCTTCATGAAAAGATCGGGAATCCAGAGAGCAAGGAAAAGATCGCGAGCGCGAACTTCC 451946 Query 63330 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 63389 || ||||| ||||| ||||| | |||| | | || ||| || |||||||| || Sbjct 451945 TCCTTTCCGTGGTTCTTACGGAGATCCAAGAACTCGAAAACATCCGAGTGCCACGGCTCG 451886 Query 63390 AAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 63449 | ||| ||||| | | ||||| | ||||| || ||||| || | |||||| || ||| Sbjct 451885 AGGTAGATGGCAAAGGCACCAGGTCTCTTGTTGCCACCCTGGTCAACGTATCTGGCCGTG 451826 Query 63450 TTATTATAAACTCTCAACATTGGAATAATACCGTTTGATATACCATTGGTACCGGAGATA 63509 || || | || | | ||| || | ||||||||| || |||| |||||||||| || Sbjct 451825 TTGTTGAAGACACGAAGCATAGGTACAATACCGTTAGAAGTACCGTTGGTACCGGCAATG 451766 Query 63510 TAGCCTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAG 63567 || ||| | | || ||| || |||| |||| || || || ||||| || | Sbjct 451765 TAAGATCCGGTAGATCGGATACGGTGAACGTTGA--GACCAATACCACCCGCCATCTTGG 451708 Query 63568 AGATTAATGCGCATCGTTTTAACGTGTCATAGATGCCTTCTATGCTATCATCGATCATGT 63627 |||| | || || || | ||||||||||| || || ||||| ||||| |||||| Sbjct 451707 AGATCATAGCACAAGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGT 451648 Query 63628 TAAGTAGAAAACAGCTAGACATTTGGTGACGAGTAGTTCCCGCATTAAATAAGGTAGGAG 63687 | || ||||| || | || | | || || || || || | ||| || | Sbjct 451647 CTACAAGGAAACAAGAGGAAAGCTGAGCCTGGGGGGTACCGGCGTTGAAAAGGGTGGGGG 451588 Query 63688 AAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT-AGCT-----GAGT 63741 | ||||| || || |||| || | |||||||| |||||||| | || || Sbjct 451587 AGGCGTGGGTGAAATATTTGCTGGACATGAGATTGTATGTCTCAATGACCTTTTCAACGT 451528 Query 63742 CTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCTTTCAA 63801 | | |||| || || || || |||||||| | ||||||||| || | || Sbjct 451527 CGTCACCCCA------GATACCGACGGCAACACGCATGATCATGTGCTGCGGCCGCTCGG 451474 Query 63802 CAATTTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAAATAGT 63861 |||||||| || | || | | ||| ||| |||||||| || || ||||| || | Sbjct 451473 CAATTTTGCCATTGAGCTTGAGAAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATT 451414 Query 63862 TGTATGAAAAGTCTCGTTCGTAAATAATAACCGAATTGAGCTTATCCTTAT 63912 ||| |||||||| ||||| | || |||| | || | |||||||| Sbjct 451413 GGTAGTTGAAGTCTCGGTCGTAGACGATTGCCGAGTCGAAATCATCCTTAT 451363 Score = 82.4 bits (90), Expect = 1e-10 Identities = 111/155 (72%), Gaps = 0/155 (0%) Strand=Plus/Plus Query 33573 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAATTCGTTAGAA 33632 |||| || || ||||| ||| ||| ||||||||||| | || | ||||| || Sbjct 758554 AACAGCAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAG 758613 Query 33633 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGAAGCGAATGATCCG 33692 || || | |||||||| || || ||||| || ||||| || ||||| ||||| | ||| Sbjct 758614 AAGGTCAAGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 758673 Query 33693 GAAAAGAAGATTCCTTCTACTGCAGCAAAGGCAAT 33727 |||||||| || || || || || ||||| || Sbjct 758674 CTGAAGAAGATACCCTCGACGGCGGCGAAGGCGAT 758708 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 629817466163760