Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_003391.1 Length=205719 Score E Sequences producing significant alignments: (Bits) Value seq11 212 8e-50 >seq11 Length=1431289 Score = 212 bits (234), Expect = 8e-50 Identities = 1212/1916 (63%), Gaps = 68/1916 (4%) Strand=Plus/Minus Query 64829 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 64887 |||| |||| ||||| || ||||| || || | || ||||| ||||||||||||| Sbjct 453249 CTTGATCCACGGTGAACTGGATGGGCTGGGCGGCAGCTTGGGTACGGAGATAGTACATTC 453190 Query 64888 CCGTTTTTAGACCGAGACTCCATCCGTAAAAATGCATACTCGTTAGTTTGGAATAACTCG 64947 |||| || |||||||| |||| || || ||||| ||||| | ||| | | | Sbjct 453189 CCGTCTTGAGACCGAGCTTCCAACCCGTGAAGTGCATGCTCGTGATCTTGCCCATAGTGG 453130 Query 64948 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 65007 | ||| || || || || | ||| || ||||||||||| || || | ||| |||| Sbjct 453129 GTTCTCTCATGTGAATGTTAAGAGACTGGGACTGATCGATGAACGCACCACGGTCGGCAG 453070 Query 65008 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 65067 |||| | | | || || | |||||||||| || || || | | ||| |||| Sbjct 453069 CCATCTGGACAACGGTACGCTGAGAGATTTCCCAAACCGTCTTGTACAATGCCTTGATAT 453010 Query 65068 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 65124 | | |||| | | | | ||||| || || ||||| || || ||||| | ||||| | Sbjct 453009 CAGCAGGAATGCTGGGGATGTTCTGGATCGAACCACCTTCGGCAATAATGCGGTTCTTCA 452950 Query 65125 TCTCATCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 65184 | | ||| ||| | | ||| | | | || || || ||||| || | Sbjct 452949 TGTTGTCAGACCACAGACCCATGTCGACAAGGTCCTTGAGTAGCCAAGGGTTAACAACCT 452890 Query 65185 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATACGGTTCCACAGACT 65244 | || ||||| | | || | || | ||| || || ||| || || || | ||| Sbjct 452889 GGAACTCTCCCGCGAGGACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCAAAGCACT 452830 Query 65245 CATTATTTCCCAAAATTTGAGCAGTTGATGCAGTCGGCATAGGTGCCACCAATAAACTAT 65304 |||| || ||||| ||||| | ||| || || ||||| || || ||||| ||||| | Sbjct 452829 CATTGTTACCCAAGATTTGCGAAGTGCTGGCTGTGGGCATGGGGGCGACCAACAAACTGT 452770 Query 65305 TTCTAAGACCGT-ATGTTCTGATTTTATCTTTTAGAGGTTCCCAATTCCAAAGATCCGAC 65363 | | | ||||| || | |||| | | |||||| ||||| | ||| ||||| | Sbjct 452769 TACGGACACCGTGCTGCT-TGATCTGCTGCTTTAGACTATCCCAGTCCCAGAGATCGGTG 452711 Query 65364 GGTACAACNNNNNNNNNNNNNNNTTGTAGAATACCGTTACTGGCGTAC----GATCCTAC 65419 || || ||| || ||||| |||| || || || | Sbjct 452710 GGCTTGACATCCCACATGTCGTATTGAAGGATACC----CTGGGAGACCGGGGAGCCCTC 452655 Query 65420 ATATGTATCGTATGGTCC---TTCCTTCTCAGCTAGTTCACAACTCGCCTCTAATGCACC 65476 || | |||| || || |||||| ||| || || |||| || || | Sbjct 452654 GTAGCTGGCGTAGGGACCGAGTTCCTT---AGCGAGCTCCATGGACGCCGTCAAGGCGGC 452598 Query 65477 GTAATAAATGGTTTCGAAGATCTTCTTATTTAG-ATCTTGTGCTTCCAGGCTA-TCAAAT 65534 || || ||||| |||||||| | || || || | ||| || ||||| | || ||| Sbjct 452597 GTGGTAGATGGTCTCGAAGATTTGTTTGTTAAGTAACTTAGCCT--CAGGCGATTCGAAT 452540 Query 65535 GGATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCT 65593 || | || |||| | || || || || | ||||| ||||| | ||||| || | Sbjct 452539 GGGT-ATCGGAGAGCTAGGAAAGCATCGGCAAGACCTTGGACACCCAATCCGATGGGACG 452481 Query 65594 ATGTCTCTTATTAGAGATTTCAGCTTCTGGAATAGGATAATAATTAATATCTATAATTTT 65653 || | | | || | | ||| || || | || || | || | || || || || Sbjct 452480 GTGGCGCATGTTGCTGTTGCGAGCCTCAGGTACGGGGTAGTGGTTGACCTCAATGATCTT 452421 Query 65654 ATTGAGATTTCTGACAATTACTTTGACCACATCCTTCAGTTTGAGAAAATC-AAATCGCT 65712 || ||||||| || | || | ||| || || | || || | ||||| | ||| Sbjct 452420 GTTCAGATTTCGCACGACCACCTGGACAACGTCGTGCAACTTCTGGAAATCGTAGGCGCC 452361 Query 65713 C---ATCTATT--ACAAAC-ATGTTCAATGCAACAGATGCCAGATTACAAACGGCTACCT 65766 | | || | ||| || | | | || |||| || ||||| || || || || |||| Sbjct 452360 CGCGTTGTAGTCCACATACGAAGGT-AAGGCAAGGGAAGCCAGGTTGCACACAGCGACCT 452302 Query 65767 CATTAGCATCCGCATATTGTATTATCTCAGTGCAAAGATTACTACACTTGATGGTTCCTA 65826 ||| || | ||| || | || ||||| ||||| || ||| || || ||||| | Sbjct 452301 CATCAGGAGCCGAGTACTCAATAATCTCGGTGCAGAGGTTAGAACTGCGAATAGTTCCCA 452242 Query 65827 AATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAATGGAGTACCAG 65886 || | || || ||||| ||| || |||||| ||||| |||||||| |||||| Sbjct 452241 GGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAATGGGTTACCAG 452182 Query 65887 TTTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA--TTATAGATT 65943 | ||| |||||| || | || || | ||| | | || | ||||| | || | | Sbjct 452181 TCTCAGTCTGAGCCTCGAGGATGGCATACCA-AAGTTTCTGGGCCTTGACCTTCTGG--C 452125 Query 65944 TGTATCTCTTTTCTCTTTCGTA--TAGTGTATACAATCGTTCGAACTCGTCTCCCCAAAC 66001 | | || |||||| | ||| | | | |||||||| || || | || Sbjct 452124 GGCCACGGCCCTCGGCTTCGTACTTCTCGTACAGAGCC--TCGAACTCATCGCCGTAGAC 452067 Query 66002 ATTGTCCAATCCAGGACATTCATCCGGACACATCAACGACCACTCTCCGTCATCCTTCAC 66061 | | | ||||| || || | |||||||| | || ||| || |||| | || || Sbjct 452066 GTCAGCGAGGCCAGGGCACTCGTTGGGACACATGAGCGTCCATTCACCGTTCTTCTCAAC 452007 Query 66062 TCGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAAATCTCTGGTTCTATGTTC 66121 || ||||| || ||||| |||||||| ||||| | || | ||| | | | | ||| Sbjct 452006 ACGCTTCATGAAAAGATCGGGAATCCAGAGAGCAAGGAAAAGATCGCGAGCGCGAACTTC 451947 Query 66122 CTCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCATAATGCCACGGTTC 66181 ||| ||||| ||||| ||||| | |||| | | || ||| | |||||||| || Sbjct 451946 CTCCTTTCCGTGGTTCTTACGGAGATCCAAGAACTCGAAAACATCCGAGTGCCACGGCTC 451887 Query 66182 CAAGTATATGGCCATAACTCCAGGCCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGT 66241 | ||| ||||| | | ||||| | ||||| || ||||| || | |||||| || || Sbjct 451886 GAGGTAGATGGCAAAGGCACCAGGTCTCTTGTTGCCACCCTGGTCAACGTATCTGGCCGT 451827 Query 66242 GTTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGAT 66301 ||| || | || | | ||| || | |||||| || || ||||| ||||| |||| || Sbjct 451826 GTTGTTGAAGACACGAAGCATAGGTACAATACCGTTAGAAGTACCGTTGGTACCGGCAAT 451767 Query 66302 ATAGCTTCCACTTGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTA 66359 || ||| | | || ||| || ||| ||||| || || || ||||| || Sbjct 451766 GTAAGATCCGGTAGATCGGATACGGTGAACGTTG--AGACCAATACCACCCGCCATCTTG 451709 Query 66360 GAGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATACTATCATCCATCATG 66419 ||||| | || || || | || |||||||| ||||| || || |||||| ||||| Sbjct 451708 GAGATCATAGCACAAGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATG 451649 Query 66420 TTAAGTAGAAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGT 66475 | | || ||||| ||| | ||| | || || || || || || | ||| Sbjct 451648 TCTACAAGGAAACA---AGAGGAAAGCTGA-GCCTGGGGGGTACCGGCGTTGAAAAGGGT 451593 Query 66476 AGGAGAAGCGTGCGTAAACCATTTTTCAGAAAGTAGATTGTACGTCTCAAT-AGCT---- 66530 || || ||||| || || |||| || | |||||||| |||||||| | || Sbjct 451592 GGGGGAGGCGTGGGTGAAATATTTGCTGGACATGAGATTGTATGTCTCAATGACCTTTTC 451533 Query 66531 -GAGTCTATATCCCATTGATGAATTCCTACTGCGACACGCATTAACATGTGCTGAGGTCT 66589 ||| | |||| || || || || |||||||| | ||||||||| || | Sbjct 451532 AACGTCGTCACCCCA------GATACCGACGGCAACACGCATGATCATGTGCTGCGGCCG 451479 Query 66590 TTCAACGATCTTGTTGTTTATTTTCAACAAGTAGGATTTTTCCAAAGTTTTAAAACCAAA 66649 || | || ||| || | || | | ||| ||| |||||||| || || ||||| Sbjct 451478 CTCGGCAATTTTGCCATTGAGCTTGAGAAGGTATGATCGCTCCAAAGTCTTGAAGCCAAA 451419 Query 66650 ATAGTTGTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTAT 66705 || | ||| |||||||| ||||| | || |||||| || | |||||||| Sbjct 451418 GTATTGGTAGTTGAAGTCTCGGTCGTAGACGATTGCCGAGTCGAAATCATCCTTAT 451363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 658172660138280