Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_003401.1 Length=133719 Score E Sequences producing significant alignments: (Bits) Value seq1 122 7e-23 >seq1 Length=7732581 Score = 122 bits (134), Expect = 7e-23 Identities = 137/181 (76%), Gaps = 2/181 (1%) Strand=Plus/Minus Query 20913 AGCTGAAGCAGCAGGGGATCAACGTGGTTGTTGTAAACGTGGGCGTCACCCAAGGTGTGC 20972 ||||| | | | || | ||| ||||||| | ||| ||||| ||||| |||| | |||| Sbjct 2739084 AGCTGCACCCGGAGCGCATCGACGTGGTCGCAGTACACGTGCGCGTCGCCCATGACGTGC 2739025 Query 20973 ACAAAGTCTCCCGGGGTCAGGCCCGTG-ACGTGAGCGATCAGATACGTCAGGAGGGCGTA 21031 | | |||||||| | || || ||||| ||||||| | ||||||||| ||||| Sbjct 2739024 GTCAGG-CTCCCGGGCACGAGCTCGCACACGTGCGCGATCATGTGCGTCAGGAGCGCGTA 2738966 Query 21032 GCTGGCGATGTTAAACGGGACCCCGAGGCCCATGTCGGCGGACCTCTGGTACAGCTGGCA 21091 |||||||||||| ||||| || || |||||||||||| ||| | |||||| ||||| || Sbjct 2738965 GCTGGCGATGTTGAACGGCACGCCCAGGCCCATGTCGCAGGAGCGCTGGTATAGCTGACA 2738906 Query 21092 G 21092 | Sbjct 2738905 G 2738905 Score = 111 bits (122), Expect = 1e-19 Identities = 199/283 (70%), Gaps = 12/283 (4%) Strand=Plus/Minus Query 21131 GTGACAAGGAGGGAGAGCCATCCGCGCGAGGTCCGCGGGGTTCCACGCGCACATAACGAT 21190 ||||||||| || || |||||| | || || || |||||||| |||| | | ||| Sbjct 2738791 GTGACAAGGCGGAAGCGCCATCTTCTTGATATCGGCCGGGTTCCAGGCGCTGAGGATGAT 2738732 Query 21191 GCGCCGATCGTGGGGCC---GCCTGTTAAT-TAGATCCACCACGTAACGCAGCTGGTCCA 21246 ||| ||||||| || ||||| | | |||| ||| || |||||| || | Sbjct 2738731 GCGTCGATCGTACGGGTTATGCCTGAGCTTGTGGATC-ACCTCGGC---CAGCTGATCGA 2738676 Query 21247 CCCCCTGACCCTCGTAGTTGGCGTCGGCCCCCCTGTACTCCGCCCCAAAATGTCTCCACT 21306 | ||||||||| |||| | | | || || |||||| ||||| || |||| ||||| Sbjct 2738675 CGCCCTGACCCGCGTAATCCGTCTTCGCGTCCACGTACTCGGCCCCGAAGTGTCGCCACT 2738616 Query 21307 GGAACCCGTACACCGGCCCCAGATCGCCCTCGCGGCGGTCCCCGA-AGCCCTGCGCCG-C 21364 |||||||||||||||||||||| |||||| | ||| | ||| || || ||| | | Sbjct 2738615 GGAACCCGTACACCGGCCCCAGGTCGCCCACCTCGCGAT--GCGACAGTCCCACGCTGTC 2738558 Query 21365 CAAAAAGGCGCGGGACCCGTGCGCGTCCCAAATTTTTACGCCG 21407 | || |||| ||||||| | ||||||| || || || ||| Sbjct 2738557 GAGGAACTCGCGCGACCCGTTCCCGTCCCATATCTTGACCCCG 2738515 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 427775911370160