Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_003529.1 Length=155060 Score E Sequences producing significant alignments: (Bits) Value seq6 89.7 5e-13 >seq6 Length=3640113 Score = 89.7 bits (98), Expect = 5e-13 Identities = 161/230 (70%), Gaps = 4/230 (2%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||||| || || ||||| ||||||||||| ||| | Sbjct 611841 CCACCACGGAGACGGAGGACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAGTCGGAC 611900 Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656 | || | || | ||||| | ||| || ||||| |||| ||||||||||| || || || Sbjct 611901 AAAGTTCGTCCA-TCTTCCAACTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGTGG 611959 Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715 || || || ||||| ||| | || | || | | || | || |||| | || | Sbjct 611960 GATACCCTCCTTGTC-TTGAATCTTCGACTTGACGTTGTCGATAGTATCGGAAGATTCGA 612018 Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 |||| | || | |||||| || ||||| || || ||||| || |||||| Sbjct 612019 CCTCGAGAGTAATCGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCATA 612068 Score = 89.7 bits (98), Expect = 5e-13 Identities = 156/227 (69%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597 || || || | ||| | || ||||| | |||||||| || || ||||| || ||| Sbjct 612376 CCACCACGGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 612435 Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657 | |||| ||| ||||| || |||||||| | |||| || ||||| || ||||| Sbjct 612436 AGAGTGCGACCGTCCTCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAGGA 612495 Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717 || ||||| ||||| ||| || || | | || | ||||||| | ||| ||| Sbjct 612496 ATACCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATAGTGTCGGAAGACTCGACC 612555 Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764 |||| || | ||||||||||| | || || ||||| || ||||| Sbjct 612556 TCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAAATCTGCAT 612602 Score = 84.2 bits (92), Expect = 2e-11 Identities = 157/231 (68%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594 ||||| || || | ||| | ||| ||||||| || ||||| || || ||||| || ||| Sbjct 611610 TGGCCACCACGGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCG 611669 Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654 |||| || | || || | ||| ||||| || |||| ||||||||||| || || Sbjct 611670 CTCAAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGC 611729 Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714 || || || || ||||| ||| || || | | || | || || | | ||| Sbjct 611730 GGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCAATGGTATCCGAAGATTCC 611789 Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765 ||||| | || | ||||| ||||| | || || || || ||||||||| Sbjct 611790 ACCTCGAGTGTGATGGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCATA 611840 Score = 82.4 bits (90), Expect = 8e-11 Identities = 105/145 (72%), Gaps = 0/145 (0%) Strand=Plus/Plus Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669 || |||||||| ||||||||| |||||| || ||||| |||||||| ||||| || || Sbjct 612141 TCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATGCCCTCCTTA 612200 Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729 || ||| || || | | || | ||||||| | ||| ||||||| ||| | Sbjct 612201 TCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGGGTGATG 612260 Query 139730 GTCTTGCCGGTCAACGTTTTTACGA 139754 ||||||||||| | || || |||| Sbjct 612261 GTCTTGCCGGTAAGGGTCTTGACGA 612285 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496063894586400