Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01]
17 sequences; 44,773,950 total letters
Query= NC_003529.1
Length=155060
Score E
Sequences producing significant alignments: (Bits) Value
seq6 89.7 5e-13
>seq6
Length=3640113
Score = 89.7 bits (98), Expect = 5e-13
Identities = 161/230 (70%), Gaps = 4/230 (2%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||||| || || ||||| ||||||||||| ||| |
Sbjct 611841 CCACCACGGAGACGGAGGACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAGTCGGAC 611900
Query 139598 ATTGTGC-TCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGG 139656
| || | || | ||||| | ||| || ||||| |||| ||||||||||| || || ||
Sbjct 611901 AAAGTTCGTCCA-TCTTCCAACTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGTGG 611959
Query 139657 TATGCCTTCTTTGTCGGTGATTTTTTG-TTTTAGCTGTTCCACTGTGTCGGTGGGCTCCA 139715
|| || || ||||| ||| | || | || | | || | || |||| | || |
Sbjct 611960 GATACCCTCCTTGTC-TTGAATCTTCGACTTGACGTTGTCGATAGTATCGGAAGATTCGA 612018
Query 139716 CCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
|||| | || | |||||| || ||||| || || ||||| || ||||||
Sbjct 612019 CCTCGAGAGTAATCGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCATA 612068
Score = 89.7 bits (98), Expect = 5e-13
Identities = 156/227 (69%), Gaps = 0/227 (0%)
Strand=Plus/Plus
Query 139538 CCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCGCTC 139597
|| || || | ||| | || ||||| | |||||||| || || ||||| || |||
Sbjct 612376 CCACCACGGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 612435
Query 139598 ATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGT 139657
| |||| ||| ||||| || |||||||| | |||| || ||||| || |||||
Sbjct 612436 AGAGTGCGACCGTCCTCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAGGA 612495
Query 139658 ATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACC 139717
|| ||||| ||||| ||| || || | | || | ||||||| | ||| |||
Sbjct 612496 ATACCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATAGTGTCGGAAGACTCGACC 612555
Query 139718 TCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCAT 139764
|||| || | ||||||||||| | || || ||||| || |||||
Sbjct 612556 TCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAAATCTGCAT 612602
Score = 84.2 bits (92), Expect = 2e-11
Identities = 157/231 (68%), Gaps = 0/231 (0%)
Strand=Plus/Plus
Query 139535 TGGCCGCCTCGTAAACGCAAAACTAAGTGAATCGTAGACTCTTTTTGAATGTTATAATCG 139594
||||| || || | ||| | ||| ||||||| || ||||| || || ||||| || |||
Sbjct 611610 TGGCCACCACGGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCG 611669
Query 139595 CTCATTGTGCTCGAGTCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGA 139654
|||| || | || || | ||| ||||| || |||| ||||||||||| || ||
Sbjct 611670 CTCAAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGC 611729
Query 139655 GGTATGCCTTCTTTGTCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCC 139714
|| || || || ||||| ||| || || | | || | || || | | |||
Sbjct 611730 GGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCAATGGTATCCGAAGATTCC 611789
Query 139715 ACCTCAACGGTCACCGTCTTGCCGGTCAACGTTTTTACGAATATTTGCATA 139765
||||| | || | ||||| ||||| | || || || || |||||||||
Sbjct 611790 ACCTCGAGTGTGATGGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCATA 611840
Score = 82.4 bits (90), Expect = 8e-11
Identities = 105/145 (72%), Gaps = 0/145 (0%)
Strand=Plus/Plus
Query 139610 TCTTCGAGCTGTTTACCAGCATAGATCAGACGTTGCTGATCGGGAGGTATGCCTTCTTTG 139669
|| |||||||| ||||||||| |||||| || ||||| |||||||| ||||| || ||
Sbjct 612141 TCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATGCCCTCCTTA 612200
Query 139670 TCGGTGATTTTTTGTTTTAGCTGTTCCACTGTGTCGGTGGGCTCCACCTCAACGGTCACC 139729
|| ||| || || | | || | ||||||| | ||| ||||||| ||| |
Sbjct 612201 TCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGGGTGATG 612260
Query 139730 GTCTTGCCGGTCAACGTTTTTACGA 139754
||||||||||| | || || ||||
Sbjct 612261 GTCTTGCCGGTAAGGGTCTTGACGA 612285
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 496063894586400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |