Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_003663.2 Length=224499 Score E Sequences producing significant alignments: (Bits) Value seq11 251 1e-61 >seq11 Length=1431289 Score = 251 bits (278), Expect = 1e-61 Identities = 1329/2080 (64%), Gaps = 58/2080 (3%) Strand=Plus/Minus Query 78708 CTTG-TCCAATGTGAATTGAATGGGAGCGGATGCGGGTTTCGTACGTAGATAGTACATTC 78766 |||| |||| ||||| || ||||| || || | || ||||| ||||||||||||| Sbjct 453249 CTTGATCCACGGTGAACTGGATGGGCTGGGCGGCAGCTTGGGTACGGAGATAGTACATTC 453190 Query 78767 CCGTTTTTAGACCGAGACTCCATCCGTAGAAATGCATACTCGTTAGTTTGGAATAACTCG 78826 |||| || |||||||| |||| || ||| ||||| ||||| | ||| | | | Sbjct 453189 CCGTCTTGAGACCGAGCTTCCAACCCGTGAAGTGCATGCTCGTGATCTTGCCCATAGTGG 453130 Query 78827 GATCTGCTATATGGATATTCATAGATTGACTTTGATCGATGAAGGCTCCCCTGTCTGCAG 78886 | ||| || || || || | ||| || ||||||||||| || || | ||| |||| Sbjct 453129 GTTCTCTCATGTGAATGTTAAGAGACTGGGACTGATCGATGAACGCACCACGGTCGGCAG 453070 Query 78887 CCATTTTTATGATCGTCTTTTGTGGAATTTCCCAAATAGTTTTATAAACTCGCTTAATAT 78946 |||| | | | || || | |||||||||| || || || | | ||| |||| Sbjct 453069 CCATCTGGACAACGGTACGCTGAGAGATTTCCCAAACCGTCTTGTACAATGCCTTGATAT 453010 Query 78947 CTTCTGGAAGGTTTG---TATTCTGAATGGATCCACCATCTGCCATAATCCTATTCTTGA 79003 | | |||| | | | | ||||| || || ||||| || || ||||| | ||||| | Sbjct 453009 CAGCAGGAATGCTGGGGATGTTCTGGATCGAACCACCTTCGGCAATAATGCGGTTCTTCA 452950 Query 79004 TCTCTTCATTCCATAATTTTCTCTCGGTTAAAACTCTAAGGAGATGCGGATTAACTACTT 79063 | | ||| ||| | | ||| | | | || || || ||||| || | Sbjct 452949 TGTTGTCAGACCACAGACCCATGTCGACAAGGTCCTTGAGTAGCCAAGGGTTAACAACCT 452890 Query 79064 GAAATTCTCCAGACAATACTCTCCGAGTGTAAATATTACTGGTATATGGTTCCACCGATT 79123 | || ||||| | | || | || | ||| || || ||| || || || | | | Sbjct 452889 GGAACTCTCCCGCGAGGACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCAAAGCACT 452830 Query 79124 CATTATTTCCCAAAATTTGAGCAGTTGATGCCGTTGGCATAGGTGCCACCAATAAACTAT 79183 |||| || ||||| ||||| | ||| || || ||||| || || ||||| ||||| | Sbjct 452829 CATTGTTACCCAAGATTTGCGAAGTGCTGGCTGTGGGCATGGGGGCGACCAACAAACTGT 452770 Query 79184 TTCTAAGACCGT-ATGATCTGATTTTATCTTTTAGAGATTCCCAATCCCAAAGATCAGAC 79242 | | | ||||| || | |||| | | |||||| ||||| ||||| ||||| | Sbjct 452769 TACGGACACCGTGCTGCT-TGATCTGCTGCTTTAGACTATCCCAGTCCCAGAGATCGGTG 452711 Query 79243 GGGACAACATTCCAAAGATCATATTGTAGAATACCGTTACTAGCGTATGATCCTGTGTAT 79302 || |||| ||| | || ||||| || ||||| | | || || ||| Sbjct 452710 GGCTTGACATCCCACATGTCGTATTGAAGGATACCCTGGGAGACCGGGGAGCCCTCGTAG 452651 Query 79303 GTTTCATAAGGTCC---TTCCTTTTCG-GCT-AATTCACAACTCGCCTCTAATGCTCCGT 79357 | | || || || |||||| || ||| || | |||| || || ||| Sbjct 452650 CTGGCGTAGGGACCGAGTTCCTTAGCGAGCTCCATGGA-----CGCCGTCAAGGCGGCGT 452596 Query 79358 AATAAATGGTTTCGAAAATCTTCTTATTGAG-ATCTTGTGCTTCTAGGCTA-TCAAATGG 79415 || ||||| ||||| || | || || || | ||| || || |||| | || ||||| Sbjct 452595 GGTAGATGGTCTCGAAGATTTGTTTGTTAAGTAACTT-AGCCTC-AGGCGATTCGAATGG 452538 Query 79416 ATAATTTAAGAG-AATAAACGCGTCTGCTAATCCTTGAACACCAATACCGATAGGTCTAT 79474 | || |||| | || || || || | ||||| ||||| | ||||| || | | Sbjct 452537 GT-ATCGGAGAGCTAGGAAAGCATCGGCAAGACCTTGGACACCCAATCCGATGGGACGGT 452479 Query 79475 GTCTCTTATTAGAAATTTC-AGCTTCTGGAATAGGATAATAATTAATATCTATAATTTTA 79533 | | | | || | || | ||| || || | || || | || | || || || || Sbjct 452478 GGCGCATGTT-GCTGTTGCGAGCCTCAGGTACGGGGTAGTGGTTGACCTCAATGATCTTG 452420 Query 79534 TTGAGATTCCTGACTATTACTTTGACCACATCCTTTAGTTTGAGAAAATC-AAATCGTCC 79592 || ||||| | || | || | ||| || || | | || | ||||| | || || Sbjct 452419 TTCAGATTTCGCACGACCACCTGGACAACGTCGTGCAACTTCTGGAAATCGTAGGCGCCC 452360 Query 79593 ---ATCTATT--ACAAAC-ATGTTCAACGCGACAGATGCCAGATTACAAACGGCTACCTC 79646 | || | ||| || | | | || || | || ||||| || || || || ||||| Sbjct 452359 GCGTTGTAGTCCACATACGAAGGT-AAGGCAAGGGAAGCCAGGTTGCACACAGCGACCTC 452301 Query 79647 ATTAGCATCCGCATATTGTATTATTTCAGTGCAGAGGTTACTACACTTAATGGTTCCTAA 79706 || || | ||| || | || || || |||||||||||| || ||| ||||| | Sbjct 452300 ATCAGGAGCCGAGTACTCAATAATCTCGGTGCAGAGGTTAGAACTGCGAATAGTTCCCAG 452241 Query 79707 ATTTTGTTGATTACTCTTTTTGTTACACGCATCCTTATAAAGAATGAACGGAGTACCAGT 79766 || | || || ||||| ||| || |||||| ||||| ||||| || ||||||| Sbjct 452240 GTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAATGGGTTACCAGT 452181 Query 79767 TTCAATCTGAGATTCTATAATCGCTTTCCAGACGACTC-GAGCCTTTA--TTATAGACTT 79823 ||| |||||| || | || || | ||| | | || | ||||| | || | | Sbjct 452180 CTCAGTCTGAGCCTCGAGGATGGCATACCA-AAGTTTCTGGGCCTTGACCTTCTGG--CG 452124 Query 79824 GTATCTCTTTTCTCTTTCGTA-TTGT-GTATATAATCGTTCGAACTCGTCTCCCCAAACA 79881 | | || |||||| || | ||| | | | |||||||| || || | || Sbjct 452123 GCCACGGCCCTCGGCTTCGTACTTCTCGTACAGAGCC--TCGAACTCATCGCCGTAGACG 452066 Query 79882 TCGTCTAATCCAGGACATTCGTCAGGACACATCAACGACCACTCTCCATCATCCTTTACT 79941 || | | ||||| || |||| |||||||| | || ||| || || | | || || Sbjct 452065 TCAGCGAGGCCAGGGCACTCGTTGGGACACATGAGCGTCCATTCACCGTTCTTCTCAACA 452006 Query 79942 CGTTTCATAAAGAGATCAGGAATCCAAAGAGCTATAAATAGATCTCTGGTTCTATGCTCC 80001 || ||||| || ||||| |||||||| ||||| | || ||||| | | | | ||| Sbjct 452005 CGCTTCATGAAAAGATCGGGAATCCAGAGAGCAAGGAAAAGATCGCGAGCGCGAACTTCC 451946 Query 80002 TCGTTTCCTGTATTCTTTTTAAGATCGAGGAACGCCATAATATCAGAATGCCACGGTTCC 80061 || ||||| ||||| ||||| | |||| | | || ||| || |||||||| || Sbjct 451945 TCCTTTCCGTGGTTCTTACGGAGATCCAAGAACTCGAAAACATCCGAGTGCCACGGCTCG 451886 Query 80062 AAGTATATGGCCATAACTCCCGGTCGTTTGTTTCCTCCCTGATCTATGTATCTAGCGGTG 80121 | ||| ||||| | | || |||| ||||| || ||||| || | |||||| || ||| Sbjct 451885 AGGTAGATGGCAAAGGCACCAGGTCTCTTGTTGCCACCCTGGTCAACGTATCTGGCCGTG 451826 Query 80122 TTATTATAAACTCTCAACATTGGAATAATACCATTGGATGTACCATTGGTCCCGGAGATA 80181 || || | || | | ||| || | |||||| || || ||||| ||||| |||| || Sbjct 451825 TTGTTGAAGACACGAAGCATAGGTACAATACCGTTAGAAGTACCGTTGGTACCGGCAATG 451766 Query 80182 TAGCTTCCACTGGCACGAATATTACTAA--TTGATAGACCTATTCCCCCTGCCATTTTAG 80239 || ||| | | || ||| || ||| ||||| || || || ||||| || | Sbjct 451765 TAAGATCCGGTAGATCGGATACGGTGAACGTTG--AGACCAATACCACCCGCCATCTTGG 451708 Query 80240 AGATTAATGCGCATCGTTTTAACGTATCATAGATGCCCTCTATGCTATCATCAATCATGT 80299 |||| | || || || | || |||||||| ||||| ||||| ||||| |||||| Sbjct 451707 AGATCATAGCACAAGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGT 451648 Query 80300 TAAGTAGAAAACAGCTAGACATTTGGTGACGACT----AGTTCCCGCATTAAATAAGGTA 80355 | || ||||| ||| | ||| | || || || || || || | ||| Sbjct 451647 CTACAAGGAAACA---AGAGGAAAGCTGA-GCCTGGGGGGTACCGGCGTTGAAAAGGGTG 451592 Query 80356 GGAGAAGCGTGCGTAAACCATTTTTCAGACAGTAGATTGTACGTCTCAATAGCTGATTCT 80415 || || ||||| || || |||| |||| |||||||| |||||||| | ||| Sbjct 451591 GGGGAGGCGTGGGTGAAATATTTGCTGGACATGAGATTGTATGTCTCAATGACCTTTTCA 451532 Query 80416 ATATC-CCATTGATGAATTCCTACCGCGACACGCATTAACATGTGCTGAGGTCTTTCAAC 80474 | || || | || || || || |||||||| | ||||||||| || | || | Sbjct 451531 ACGTCGTCACCCCAG-ATACCGACGGCAACACGCATGATCATGTGCTGCGGCCGCTCGGC 451473 Query 80475 GATCTTGTTATTTATTTTCAACAAGTAAGATTTTTCCAAAGTTTTAAAACCAAAATAGTT 80534 || ||| ||| | || | | ||| ||| |||||||| || || ||||| || | Sbjct 451472 AATTTTGCCATTGAGCTTGAGAAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTATTG 451413 Query 80535 GTATGAAAAGTCTCGTTCGTAAATAATAACCGAGTTGAGTTTATCCTTATATTTGTTAAC 80594 ||| |||||||| ||||| | || |||||| || | |||||||| | | || Sbjct 451412 GTAGTTGAAGTCTCGGTCGTAGACGATTGCCGAGTCGAAATCATCCTTATGCCTCATGAC 451353 Query 80595 TACATCCATGGTGATACTT-GAAATAATCGGAGAATGTTTCCCATTTTTAGGATTAACAT 80653 ||| ||| || || | ||| || || ||| | || |||| | || || | | Sbjct 451352 -ACACTCATAAGTATCTTTGGCAATCATAGGCGAAGGCTTGTTATTTCTGGGGTTGATGT 451294 Query 80654 AGTTGAATAAATCCTCCATCACTTCACTAAATAGtttttttGTTTCCTTGTGTAGATTTG 80713 | | | ||| ||| | || | | | || || || | ||||||||| |||| Sbjct 451293 AATGGTATAGATCGCTGACAACCGAAGACCACTGCTTCTTAGTCTGCTTGTGTAGGTTTG 451234 Query 80714 ATACGGCTATTCTGGCGGCTAAAATGGCATAATCTGGATG 80753 | ||||| || | ||| || | |||||||||||||| || Sbjct 451233 AAACGGCAATACGGGCAGCCAGGATGGCATAATCTGGGTG 451194 Score = 86.0 bits (94), Expect = 9e-12 Identities = 110/152 (72%), Gaps = 0/152 (0%) Strand=Plus/Plus Query 49951 AACATCAAACATGCGAAATCGCAGTGCAGACCCTCGTCTCTACTAATTAGTTCGTTGGAA 50010 |||| || || ||||| ||| ||| ||||||||||| | || || |||||||| Sbjct 758554 AACAGCAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAG 758613 Query 50011 AACGTGAGTCCGGGCATTAGGCCACGCTTTTTAAGCCAAAATATGGACGCAAATGACCCA 50070 || || | |||||||| || || ||||| || ||||| || ||||| || || | || Sbjct 758614 AAGGTCAAGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 758673 Query 50071 GAAAAGAAGATTCCTTCTACTGCGGCAAAGGC 50102 |||||||| || || || ||||| ||||| Sbjct 758674 CTGAAGAAGATACCCTCGACGGCGGCGAAGGC 758705 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 718268647367880