Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_004156.2 Length=231621 Score E Sequences producing significant alignments: (Bits) Value seq11 123 4e-23 >seq11 Length=1431289 Score = 123 bits (136), Expect = 4e-23 Identities = 343/519 (66%), Gaps = 23/519 (4%) Strand=Plus/Minus Query 125359 CTATACGTAAAAAGGCTCAATGGGTGATTCGGTGGATCGATGACGACAAGTCTTCGTACG 125418 |||| || || ||||| | |||| | || ||||||| ||| | |||| | | || Sbjct 758779 CTATCCGCAAGAAGGCCGACTGGGCTCTCCGATGGATCGCCGACAAGCAGTCGACTTTCG 758720 Query 125419 CCGACAGACTGGTGGCATTCGCCGCCGTAGAGGGCATCTTCTTTTCGGGTAGTTTTGCGG 125478 | | | || | || ||||||||||| ||||| |||||||| ||| || || Sbjct 758719 CTCAGCGTTTGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCT 758660 Query 125479 CCATCTTTTGGCTCAAGAAGCGCGGACTCATGCCCGGACTGACGCACAGTAACGAGTTTA 125538 ||||||| ||||||||||||||||| ||||||||||| |||| | |||||| | | Sbjct 758659 CCATCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAGCTCA 758600 Query 125539 TATCTCGAGACGAGGGCCTACACTGTGACTTTGCCATTCTACTGTT-TCGCAACT-ATCT 125596 | || || |||||||| || ||| ||||| ||| || ||||| || || || | | Sbjct 758599 TCTCCCGCGACGAGGGTCTCCACACCGACTTCGCCTGCCTGCTGTTCTCCCACCTCAACA 758540 Query 125597 GCGTCCCGAG--TGCAGATCCAGCGATGAAAAGGTCATCAACATTGTAACCGATGCCGTG 125654 | ||| || |||||| ||| ||| |||| ||| || ||||| Sbjct 758539 ACCGCCCCAGCAAGCAGAT-----GAT--TCAGGAGATCATCAT------GGACGCCGTC 758493 Query 125655 AGGATAGAACAAGAGTTTCTAACCGAATCCCTACCGGTCAGCATGATTGGCATGAACTGC 125714 | ||| || || ||||| || ||||| |||| || | | | | |||||||||| Sbjct 758492 AAGATCGAGCAGGAGTTCCTGACCGAGGCCCTGCCTTGCGCCCTCCTCGGCATGAACTCG 758433 Query 125715 AAGCTAATGTGCGAGTACATAGAGTTTGTGGCAGATCGTCTACTGTACGAGTTGATTGGC 125774 || || ||| ||||||| ||||| || || || || || || || | ||| Sbjct 758432 AACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTCCT---CGTCGCCCTCGGC 758376 Query 125775 --CG-CAAGATTTACAACGCCAAGAATCCCTTTGATTTCATGACCAGCATATCACTAGAG 125831 || ||| | ||| || || || || || || ||| | ||| || || | Sbjct 758375 AACGAGAAGGTCTACCGGTCCGCCAACCCGTTCGACTTTATGGAGAACATCTCTCTCGGC 758316 Query 125832 GGTAAGACCAACTTTTTCGAGAAGAAGGTCAGCGAGTAC 125870 || ||||||||||| ||||||||| ||| |||||||| Sbjct 758315 GGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTAC 758277 Score = 123 bits (136), Expect = 4e-23 Identities = 204/289 (71%), Gaps = 4/289 (1%) Strand=Plus/Minus Query 125019 ATTTGGGAAATGTACAAAAAGGCTCAGGCCTCCTTTTGGACGGTCGAAGAGGTCGATCTG 125078 || ||| | |||||||| ||||| ||||||| || ||||| | ||| ||| ||||||| Sbjct 759187 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATCGATCTT 759128 Query 125079 TCCAAGGACCTGTACGATTGGGAGACTCGTTTGACTGAAACTGAGCGAGAGTTTATATCG 125138 |||||||| || |||||||| | | | | | || |||| | || || || Sbjct 759127 TCCAAGGATCTCCACGATTGGAACAACAGAATCAACGAGGATGAGAAGTACTTCATCTCT 759068 Query 125139 CACATTTTGGCCTTCTTTGCCGGCTCCGATGGAATCGTCAACGACAATC-TGTTGACACG 125197 ||||| | |||||||| |||| || || || ||||||||||| || | ||| || || Sbjct 759067 CACATCCTTGCCTTCTTCGCCGCTTCGGACGGTATCGTCAACGAGAACCTTGTCGA-GCG 759009 Query 125198 ATTCTCTCAAGAGTTGACCATTCCAGAGGTGTCG-TGCTTTTACGGATTCCAAATCATGA 125256 ||| |||| | || || || | ||| ||||| ||||| ||||| ||||||| Sbjct 759008 TTTCAGCGGAGAGGTTCAGATCCCCGAAG-CTCGATGCTTCTACGGTTTCCAGATCATGA 758950 Query 125257 TTGAGAACGTGCACTCGGAAATGTACTCTACACTGATTGACATGTACAT 125305 | |||||| | ||||| || | |||||| || ||||||| ||||| Sbjct 758949 TGGAGAACATCCACTCCGAGACCTACTCTCTTCTCATTGACACCTACAT 758901 Score = 102 bits (112), Expect = 1e-16 Identities = 323/497 (65%), Gaps = 8/497 (2%) Strand=Plus/Plus Query 96865 GATACGTTACACAGGGCGGCAATAAACGGCCAGGCGCTATAGCCGTCTACTTGGAACCTT 96924 |||||||| ||||| ||||| || | || || || | ||| ||||| | || || | Sbjct 451834 GATACGTTGACCAGGGTGGCAACAAGAGACCTGGTGCCTTTGCCATCTACCTCGAGCCGT 451893 Query 96925 GGCACGCGGACGTTTTTGACTTTATCGAGATGCGCAAAAACTCTGGCTTTGAAGAGGCAC 96984 ||||| |||| ||||| || || | || | || || ||| || || || | | Sbjct 451894 GGCACTCGGATGTTTTCGAGTTCTTGGATCTCCGTAAGAACCACGGAAAGGAGGAAGTTC 451953 Query 96985 GAGCCAGGGACTTGTTTTATGCACTCTGGGTGCCAGATTTGTTCATGAAGCGCGT---CA 97041 | || | || | || ||| |||||| | || ||| | ||||||||||| || | Sbjct 451954 GCGCTCGCGATCTTTTCCTTGCTCTCTGGATTCCCGATCTTTTCATGAAGCGTGTTGAGA 452013 Query 97042 ACGACGGTGGCTACTGGAGCCTAATGTGCCCCGACTCGTCACCCGGTCTGTCCGATTGCT 97101 | |||||| | |||| || ||||| ||| || || || || || | || || Sbjct 452014 AGAACGGTG---AATGGACGCTCATGTGTCCCAACGAGTGCCCTGGCCTCGCTGACGTCT 452070 Query 97102 GGGGCGAAGAGTTTGAGGCCAAGTACACGGCCTACGAGCAAGAGGGCCG-ATACGTGAGA 97160 ||||| ||||| ||||| |||| | ||||| |||||||| || ||| Sbjct 452071 ACGGCGATGAGTTCGAGGCTCTGTACGAGAAGTACGAAGCCGAGGGCCGTGGCCGCCAGA 452130 Query 97161 CGAGTCGATGCACGAGAACTGTGGAAGGCCATCGTGACGGCTCAGGTAGAGACTGGAACT 97220 | ||| | || | |||| ||| | |||||| | ||||||| |||||||| | Sbjct 452131 AG-GTCAAGGCCCAGAAACTTTGGTATGCCATCCTCGAGGCTCAGACTGAGACTGGTAAC 452189 Query 97221 CCGTACATTCTCTACAAGGATACCGTGAATCGCAACAGCAACCAACGCCACTTGGGCACC 97280 || | ||| || ||||||||| | || ||||| |||||||| || |||| || Sbjct 452190 CCATTCATGCTTTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACT 452249 Query 97281 ATCAAGGGCTCCAATCTGTGCACGGAAATTGTAGAGTACGCCTCTCCGGACGAGACGGCA 97340 || | || || || ||||| || ||| | |||||| | |||| || ||| || Sbjct 452250 ATTCGCAGTTCTAACCTCTGCACCGAGATTATTGAGTACTCGGCTCCTGATGAGGTCGCT 452309 Query 97341 GTTTGCGTTCTGGCATC 97357 || ||| ||||| || Sbjct 452310 GTGTGCAACCTGGCTTC 452326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 741059042524920