Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_005309.1 Length=359853 Score E Sequences producing significant alignments: (Bits) Value seq15 152 1e-31 seq6 125 2e-23 seq3 107 4e-18 >seq15 Length=310649 Score = 152 bits (168), Expect = 1e-31 Identities = 152/197 (77%), Gaps = 0/197 (0%) Strand=Plus/Minus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || || || ||||| || || |||||||| ||||| | ||||| || || || || || Sbjct 111196 GTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCG 111137 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | ||| || || ||||| |||||||| || ||||||||||| | ||| Sbjct 111136 GCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGAATCTTGGATTTG 111077 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 ||||| || | ||||||||||| || ||||| || || |||||||| || ||||| || Sbjct 111076 ACATTATCGATGGTATCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTAAGGGTC 111017 Query 104543 TTTACAAATATCTGCAT 104559 ||||| || |||||||| Sbjct 111016 TTTACGAAAATCTGCAT 111000 >seq6 Length=3640113 Score = 125 bits (138), Expect = 2e-23 Identities = 146/197 (74%), Gaps = 0/197 (0%) Strand=Plus/Plus Query 104363 GTAGATTCTTTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCA 104422 || |||||||||||||| |||||||| || | ||||| || ||||| | || |||||| Sbjct 611871 GTGGATTCTTTCTGAATGTTATAGTCGGACAAAGTTCGTCCATCTTCCAACTGCTTTCCA 611930 Query 104423 GCAAAAATTAGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTT 104482 || || || || | || || ||||| || || || || || || |||||||| | || Sbjct 611931 GCGAAGATGAGACGTTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTCGACTTG 611990 Query 104483 ACATTTTCTACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTT 104542 || || || | |||||| || ||| ||||| || ||||| |||||||| || | || Sbjct 611991 ACGTTGTCGATAGTATCGGAAGATTCGACCTCGAGAGTAATCGTCTTACCCGTCAAGGTC 612050 Query 104543 TTTACAAATATCTGCAT 104559 || || || |||||||| Sbjct 612051 TTGACGAAGATCTGCAT 612067 >seq3 Length=5105224 Score = 107 bits (118), Expect = 4e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 104372 TTCTGAATATTATAGTCAGATAGAGTTCTACCGTCTTCTAGTTGTTTTCCAGCAAAAATT 104431 ||||| || || |||||||| || || | || || || || || |||||||| || || Sbjct 833602 TTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 833543 Query 104432 AGCCTCTGTTGATCAGGAGGTATTCCTTCTTTATCCTGAATCTTTGCTTTTACATTTTCT 104491 || | ||| || ||||| || |||||||| || ||||||||||| | || ||||| || Sbjct 833542 AGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 833483 Query 104492 ACGGTATCGCTAGGTTCTACCTCTAGTGTAATAGTCTTACCAGTAAGTGTTTTTACAAA 104550 | ||| ||| || || ||||| || || || ||||| || || || || || || || Sbjct 833482 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 833424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1151398149211036