Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_005832.1 Length=106332 Score E Sequences producing significant alignments: (Bits) Value seq1 89.7 3e-13 >seq1 Length=7732581 Score = 89.7 bits (98), Expect = 3e-13 Identities = 166/241 (69%), Gaps = 2/241 (1%) Strand=Plus/Minus Query 25737 CAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTACTCTGCTCCGAA 25796 ||||||||| || ||| |||| ||| || | | || |||| |||||| || ||||| Sbjct 2738686 CAGCTGATCGACGCCCTGACCCGCGTAATCCGTCTTCGCGTCCACGTACTCGGCCCCGAA 2738627 Query 25797 ATACCTCCACTGGAACCCGTACACCGGTCCTAGGTCTCCATCTTCCCTGTGCTCAAAGCC 25856 | | ||||||||||||||||||||| || ||||| || | || | ||| | || | Sbjct 2738626 GTGTCGCCACTGGAACCCGTACACCGGCCCCAGGTCGCCCACCTCGCGATGC-GACAGTC 2738568 Query 25857 CCTC-TTATCCAAAAAGTCTCTGGAACCATTGGCGTCCCAGATCTTTACCCCCTTCTCGG 25915 || | | || | || || | || || || ||||||| ||||| ||||| ||| | Sbjct 2738567 CCACGCTGTCGAGGAACTCGCGCGACCCGTTCCCGTCCCATATCTTGACCCCGGCCTCCG 2738508 Query 25916 AGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCGCCGTGACGGCCT 25975 | ||| | || ||| ||| |||||||| || |||||||| |||||||| Sbjct 2738507 ATAGCGCCAGCGACGACGTGTTCCCCTCCACGAACCATAGAAGCTCCGCTACGACGGCCT 2738448 Query 25976 T 25976 | Sbjct 2738447 T 2738447 Score = 86.0 bits (94), Expect = 4e-12 Identities = 139/196 (71%), Gaps = 3/196 (2%) Strand=Plus/Minus Query 25398 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCTACGTGATCCAGGTAGACGTGAGCG 25457 |||||||| | ||||||||| | |||| || ||||| || ||| ||||| ||| Sbjct 2739099 CTGGGCTCGCGCTCGAGCTGCACCCGGAGCGCATCGACGTGGTCGCAGTACACGTGCGCG 2739040 Query 25458 TCTCCCAGAGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTAACGTAAGCCATCATGTA 25516 || |||| ||| | || ||| || || | ||| || |||| || ||||||| Sbjct 2739039 TCGCCCATGACGTGCGTCAGGCTC-CCGGGCACGAGCTCGCACACGTGCGCGATCATGTG 2738981 Query 25517 CGTGAGGAGAAAGTAGCTGGCGATGTTAAAGGGTACCCCGAACCCCATGTCCCCCCGACC 25576 ||| ||||| ||||||||||||||| || || || || | ||||||| | | || | Sbjct 2738980 CGTCAGGAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGGCCCATGT-CGCAGGAGC 2738922 Query 25577 TCTGGTAGAGCTGACA 25592 |||||| |||||||| Sbjct 2738921 GCTGGTATAGCTGACA 2738906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 340137529527741