Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_005839.2 Length=131680 Score E Sequences producing significant alignments: (Bits) Value seq15 104 2e-17 seq6 89.7 4e-13 >seq15 Length=310649 Score = 104 bits (114), Expect = 2e-17 Identities = 147/204 (72%), Gaps = 2/204 (1%) Strand=Plus/Minus Query 48524 TGAAGTGTGCTCTCCTTTTGAATGTTGTAATCAGCCAATTGT-CGCTCGTCCTCCAGCTG 48582 ||||| ||| |||||| || |||||||| |||| || || || ||||||| ||||| Sbjct 111202 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA-AAGAGTACGGCCGTCCTCGAGCTG 111144 Query 48583 CTTACCGCCGTAAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTT 48642 ||| ||| || | || | ||||||||| || || | | |||||||||| ||| || Sbjct 111143 CTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGAATCTT 111084 Query 48643 CTGCTTGATAGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGT 48702 |||| | | ||||||||| |||||||| ||||| || || || || || || Sbjct 111083 GGATTTGACATTATCGATGGTATCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCCGT 111024 Query 48703 GAGAGTTTTCACAAAAATCTGCAT 48726 || || || || ||||||||||| Sbjct 111023 AAGGGTCTTTACGAAAATCTGCAT 111000 >seq6 Length=3640113 Score = 89.7 bits (98), Expect = 4e-13 Identities = 142/199 (71%), Gaps = 6/199 (3%) Strand=Plus/Plus Query 48535 CTCCTTTTGAATGTTGTAATCAGCCA-ATTGTCGCTCGTCCTCCAGCTGCTTACCGCCGT 48593 |||||| || |||||||| || | | | || || ||||||| || |||||||| || Sbjct 612411 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTG-CGACCGTCCTCGAGTTGCTTACCAGCGA 612469 Query 48594 AAATTAAACGCTGCTGATCCACCGGCACACTTTCCTTGTCCATAATTTTCTGCTTGA--T 48651 |||| || |||||||| || || | || |||||||||| || ||| ||| | | Sbjct 612470 AAATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTCGACTTAACGT 612529 Query 48652 AGACGCTATGGTATCGGTAGACTCCGTCTCGACTGTTATGGTTTTACCGGTGAGAGTTTT 48711 | || || || |||| |||||| ||| | || ||||| || ||||| || || || Sbjct 612530 TGTCGATA--GTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTT 612587 Query 48712 CACAAAAATCTGCATCGTG 48730 || |||||||||||| || Sbjct 612588 AACGAAAATCTGCATCTTG 612606 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 421251112722017