Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_007921.1 Length=147544 Score E Sequences producing significant alignments: (Bits) Value seq11 141 9e-29 seq6 131 2e-25 seq15 125 7e-24 seq3 84.2 2e-11 >seq11 Length=1431289 Score = 141 bits (156), Expect = 9e-29 Identities = 601/936 (64%), Gaps = 20/936 (2%) Strand=Plus/Minus Query 145058 TTGACGACCTGAAACTCGCCGGCCAACACACGACGCAAATACACGTTAGACGTGAAGGGT 145117 || || ||||| ||||| || || | ||||||||| | || | ||| || ||| | || Sbjct 452899 TTAACAACCTGGAACTCTCCCGCGAGGACACGACGCGAGTAGATGTTGGAGGTGTAAGGC 452840 Query 145118 TCAAAAGACTCGTTATTGCCCAGGATTTGAGCGGTCGTTGCGGTGGGCATGTACGCCACC 145177 ||||| |||| || || |||| |||||| | || | || ||||||||| || ||| Sbjct 452839 TCAAAGCACTCATTGTTACCCAAGATTTGCGAAGTGCTGGCTGTGGGCATGGGGGCGACC 452780 Query 145178 AATAATGAATTGCGCAGGCCGTGCTTCTTGATGTCTTCCTTTAGCGTACCCCAATCCCAT 145237 || || || || | ||||||| |||||| | | |||||| || |||| ||||| Sbjct 452779 AACAAACTGTTACGGACACCGTGCTGCTTGATCTGCTGCTTTAGACTATCCCAGTCCCAG 452720 Query 145238 AGCGAAGTCGGCCTCACGTCCCACATGTCGTACTGCAAAATGCCCTCGCTGGCGGGGCTG 145297 || || ||| | || |||||||||||||| || | || |||| | | | ||| | Sbjct 452719 AGATCGGTGGGCTTGACATCCCACATGTCGTATTGAAGGATACCCTGGGAGACCGGGGAG 452660 Query 145298 CCTTGAAAGGAACTGTAACTGCCCCAAGTT--TTGGCGAGCTCGCAACTCGCCTCCAGAG 145355 || | || ||| | || |||| || |||||||| |||| || | Sbjct 452659 CCCTCGTAGCTGGCGTA--GGGACCGAGTTCCTTAGCGAGCTCCATGGACGCCGTCAAGG 452602 Query 145356 CGCCGAAATAAATTGTCTCGGCAATTTGCCTGTTGAGCAGCATCGCTTCA-TCGCTCTCG 145414 || || || || |||||| ||||| |||| || | | | || ||| || | ||| Sbjct 452601 CGGCGTGGTAGATGGTCTCGAAGATTTGTTTGTTAAGTAACTTAGCCTCAGGCGAT-TCG 452543 Query 145415 TACGGCATGCGCAGCAGTACAAAAGCATCGGCGAGCCCCTGTATTCCCACGCCGATGGGC 145474 | || || || || ||||||||||| || || || | |||| |||||||| Sbjct 452542 AATGGGTATCGGAGAGCTAGGAAAGCATCGGCAAGACCTTGGACACCCAATCCGATGGGA 452483 Query 145475 CGATGTTTCATGTTGCTCATCCTCGCCGACTC-GATA--GGATATCGATTACGGTCGATA 145531 || || ||||||||| | | || ||| | || || || | || || || Sbjct 452482 CGGTGGCGCATGTTGCTGTTGCGAGC---CTCAGGTACGGGGTAGTGGTTGACCTCAATG 452426 Query 145532 ATTTTATTCAAGTTTCGCACTACTACCTTTGTAATGTGCCGCAACTTTTCAAAGTCAAAC 145591 || || |||| |||||||| || |||| || || ||||||| | || || | Sbjct 452425 ATCTTGTTCAGATTTCGCACGACCACCTGGACAACGTCGTGCAACTTCTGGAAATCGTAG 452366 Query 145592 CGAGCCTCGTCAACGACCACACAGCTATTGACGGCGATCGACGCCAAATTACAAACTGCC 145651 || ||| | ||||| | | | ||| | || |||| || || || || Sbjct 452365 GCGCCCGCGTTGTAGTCCACATACGAAGGTAAGGCAAGGGAAGCCAGGTTGCACACAGCG 452306 Query 145652 GTCTCCTC-GGCGTCGCTGTATTGTACGATCTCGGCGCACAAATTGCTACATTTGATGGT 145710 ||| || || | || ||| | | ||||||| ||| | || || || || Sbjct 452305 ACCTCATCAGGAGCCG-AGTACTCAATAATCTCGGTGCAGAGGTTAGAACTGCGAATAGT 452247 Query 145711 TCCCAGATTTTGCTGATTACTTTTCCTGTTGCACGCGTCCTTGTAGAGCATGTACGGTCC 145770 |||||| || | ||| || || || | |||||| |||||||| |||||| | || Sbjct 452246 TCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAATGGGTT 452187 Query 145771 GCCAGTCTCCACCTGCGTCTCCACGAT--AAAACGGTGCAAG-TCCTGCGCACGCACCTG 145827 |||||||| ||| | ||| | ||| | || ||| | ||| || |||| Sbjct 452186 ACCAGTCTCAGTCTGAGCCTCGAGGATGGCATAC---CAAAGTTTCTGGGCCTTGACCTT 452130 Query 145828 CTGCTGGTAGCGGCCCTCTTCTTCGTATTTCCTGTAGAGCTCCTCAAACGCGGAACCGTA 145887 ||| || |||||||| ||||||| ||| ||| || |||| ||| | ||||| Sbjct 452129 CTGGCGGCCACGGCCCTCGGCTTCGTACTTCTCGTACAGAGCCTCGAACTCATCGCCGTA 452070 Query 145888 GCAATCGGACAGGCCGGGACACTTGTTGGGACACATCAGCGACCATACGCCGTTGGCGTT 145947 | || | ||||| || |||| |||||||||||| |||| |||| | ||||| | Sbjct 452069 GACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATGAGCGTCCATTCACCGTTCTTCTC 452010 Query 145948 GACGCGCTCCATAAACAAATCTGGCACCCACAGCGC 145983 || |||| ||| || | ||| || | ||| || || Sbjct 452009 AACACGCTTCATGAAAAGATCGGGAATCCAGAGAGC 451974 Score = 111 bits (122), Expect = 1e-19 Identities = 340/511 (67%), Gaps = 25/511 (5%) Strand=Plus/Minus Query 46096 CGCAAGAAAACCGACTGGGCGATGAAGTGGATCAACAGCA-GCACCGCGACTTTCGCCGA 46154 |||||||| |||||||||| | |||||| | || ||| |||||||||| | Sbjct 758774 CGCAAGAAGGCCGACTGGGCTCTCCGATGGATCGCCGACAAGCAGT-CGACTTTCGCTCA 758716 Query 46155 GCGTATGGTGGCCTTTGCGATTGTGGAGGGCGTCtttttttCTGGCAGTTTTGCCGCCAT 46214 |||| || | ||||| || || ||||| |||| || || || ||| |||| Sbjct 758715 GCGTTTGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCAT 758656 Query 46215 CTTTTACATCAA-AACCAAGGGCATCATGCCCGGCCTGACGTTTAGCAACGAGCTGATAT 46273 ||| | |||| || | || | ||||||||||| |||| || ||||||||| || | Sbjct 758655 CTTCTGGCTCAAGAAGCGCGGTC-TCATGCCCGGCTTGACCTTCTCCAACGAGCTCATCT 758597 Query 46274 CGCGCGACGAGGGCCTGCATACGGACTTTGCGTGTCT-CTACTATAACACTCGCGTGCAC 46332 | ||||||||||| || || || ||||| || || || || | | ||| | | Sbjct 758596 CCCGCGACGAGGGTCTCCACACCGACTTCGCCTGCCTGCTGTTCTCCCAC-------CTC 758544 Query 46333 GACAAGCTTGCGCCCGACACC--GTGCT----GAGCATGTTCAAGGAGGCGGTGGCCATT 46386 |||| | || || | | | || | ||| || ||| ||| || || || Sbjct 758543 AACAACC--GCCCCAGCAAGCAGATGATTCAGGAG-ATCATCATGGACGCCGTCAAGATC 758487 Query 46387 GAGAAGGAGTTTTTTACGGCCGCACTGCCCGCTGCCCTGCTGGGCATGAACGCACAGTCA 46446 ||| ||||||| | || | || ||||| ||||| || ||||||||| | | Sbjct 758486 GAGCAGGAGTTCCTGACCGAGGCCCTGCCTTGCGCCCTCCTCGGCATGAACTCGAACCTC 758427 Query 46447 ATGTGCGACTACATCGAGTTTGTAGCGGACCGACTGCTCGTGCAGCTTCACCAGC-CGAA 46505 ||| | ||||||||||| || || ||||| || ||||| | | || || | ||| Sbjct 758426 ATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGT-CGCCCTCGGCAACGAGAA 758368 Query 46506 GCATTTTCACGCGCG-CAATCCATTTGAGTTTATGAACAACATCTCCCTGGAGGGCAAAA 46564 | | | | | || ||| || || || |||||| | |||||||| || | ||||| | Sbjct 758367 G-GTCTACCGGTCCGCCAACCCGTTCGACTTTATGGAGAACATCTCTCTCGGCGGCAAGA 758309 Query 46565 CTAATTTTTTCGAAAAGCGCGTCGGCGAGTA 46595 | || || ||||| ||||||||||||||||| Sbjct 758308 CCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 758278 >seq6 Length=3640113 Score = 131 bits (144), Expect = 2e-25 Identities = 165/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || || || | ||| |||||||| || |||||||| ||| Sbjct 612376 CCACCACGGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 612435 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||||| |||||| || ||||| || ||| | || || ||||||||||| ||||| Sbjct 612436 AGAGTGCGACCGTCCTCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAGGA 612495 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || ||||| ||||| ||| ||| ||| | | || | ||| |||| ||||||| Sbjct 612496 ATACCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATAGTGTCGGAAGACTCGACC 612555 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 || | || | ||| || ||||| || || || |||||||||||||| Sbjct 612556 TCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAAATCTGCAT 612602 Score = 105 bits (116), Expect = 6e-18 Identities = 160/228 (70%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 131007 GCCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCT 131066 |||||| || | ||| || || || || | ||||||||||| || |||||||| ||||| Sbjct 611612 GCCACCACGGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 611671 Query 131067 CATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGG 131126 || || || ||||| | |||||| || ||| |||| | ||| |||||||| || || Sbjct 611672 CAAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGG 611731 Query 131127 GATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGAT 131186 ||| || || ||||| ||| || ||| | | || | ||||| | || || | Sbjct 611732 GATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCAATGGTATCCGAAGATTCCAC 611791 Query 131187 GTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCAT 131234 |||| || | ||| || ||||| || || || || || || ||||| Sbjct 611792 CTCGAGTGTGATGGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 611839 Score = 104 bits (114), Expect = 2e-17 Identities = 153/217 (71%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | ||| || || | || | || |||||||| ||||||||||| || Sbjct 612069 CCACCACGAAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAA 612128 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | ||| || ||||| |||||||| || || |||| || ||||||||||| |||||| Sbjct 612129 AGGGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGG 612188 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 || || || || || ||| ||| ||||| | || | || |||| ||||||| Sbjct 612189 ATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCGACC 612248 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 || | ||| | ||| || ||||| || || || |||| Sbjct 612249 TCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACGA 612285 >seq15 Length=310649 Score = 125 bits (138), Expect = 7e-24 Identities = 165/229 (72%), Gaps = 0/229 (0%) Strand=Plus/Minus Query 131008 CCACCGCGCAAACGCAGCACTAAATGTATGGTCGACTCCTTTTGAATGTTGTAATCGCTC 131067 ||||| || | || || || | || | ||| |||||||| || |||||||| || Sbjct 111226 CCACCACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 111167 Query 131068 ATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGATTAAACGCTGCTGGTCCGGAGGG 131127 | || || |||||| ||||||||||| ||| |||| | |||||||||||| ||||| Sbjct 111166 AGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGA 111107 Query 131128 ATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCTCCACAGTATCGGTGGACTCGATG 131187 |||||||| ||||| || || |||| | || | |||||| | ||||| | Sbjct 111106 ATTCCTTCCTTGTCCTGAATCTTGGATTTGACATTATCGATGGTATCGCTAGACTCCACC 111047 Query 131188 TCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGAAAATCTGCATGA 131236 |||| ||| | || || || || || || ||||||||||||||||||| Sbjct 111046 TCGAGGGTGATAGTCTTGCCCGTAAGGGTCTTTACGAAAATCTGCATGA 110998 >seq3 Length=5105224 Score = 84.2 bits (92), Expect = 2e-11 Identities = 127/181 (70%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 131045 CCTTTTGAATGTTGTAATCGCTCATGGTGCGCGAGTCCTCTAGCTGCTTGCCTGCGTAGA 131104 |||| || |||||||| || | ||| || ||||| |||||||| || ||| ||| Sbjct 833604 CCTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGA 833545 Query 131105 TTAAACGCTGCTGGTCCGGAGGGATTCCTTCTTTGTCGGTGATTTTCTGCTTGAGCTGCT 131164 | | |||||||||||| || || |||||||| ||||| || || ||||| | | Sbjct 833544 TCAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGT 833485 Query 131165 CCACAGTATCGGTGGACTCGATGTCGACGGTAACGGTTTTACCGGTTAGAGTTTTTACGA 131224 | | || |||| ||||| | |||| ||| | ||| || || || || || || |||| Sbjct 833484 CAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGA 833425 Query 131225 A 131225 | Sbjct 833424 A 833424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 472012699697280