Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_008586.1 Length=131204 Score E Sequences producing significant alignments: (Bits) Value seq6 134 1e-26 >seq6 Length=3640113 Score = 134 bits (148), Expect = 1e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 ||||| || || || || || || || ||||| ||| | ||||| || || ||| | || Sbjct 612067 ATGCAGATCTTCGTCAAGACCTTGACGGGTAAGACGATTACTCTCGAGGTCGAATCTTCC 612008 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 ||||| | ||| | |||| || |||||||||||||||||||| ||||| || || Sbjct 612007 GATACTATCGACAACGTCAAGTCGAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAG 611948 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 |||||||| || || || || || ||||| || ||| || || | ||||| || ||| Sbjct 611947 CAACGTCTCATCTTCGCTGGAAAGCAGTTGGAAGATGGACGAACTTTGTCCGACTATAAC 611888 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGT 22427 ||||| |||||||||||| | || || || Sbjct 611887 ATTCAGAAAGAATCCACCCTTCACTTGGT 611859 Score = 113 bits (124), Expect = 4e-20 Identities = 151/210 (72%), Gaps = 0/210 (0%) Strand=Plus/Minus Query 22219 ATGCAAATTTTTGTTAAAACTTTAACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACC 22278 |||||||| ||||| || || | ||||| || || |||| || || |||||| | | Sbjct 611839 ATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACCATCACACTCGAGGTGGAATCTTCG 611780 Query 22279 GATACCGTGGACGATATCAAACAAAAAATTCAAGACAAGGAGGGTATTCCACCCGATCAA 22338 |||||| | ||| | | || || || || |||||||||||||| || || || || Sbjct 611779 GATACCATTGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 611720 Query 22339 CAACGTCTTATATTTGCCGGCAAACAGTTAGAGGATCACCGCACCGTCTCCGATTACAAC 22398 ||||||||||| || ||||| || ||||| |||||| ||| || | ||| |||||| Sbjct 611719 CAACGTCTTATCTTCGCCGGTAAGCAGTTGGAGGATGGCCGAACTTTGAGCGACTACAAC 611660 Query 22399 ATTCAAAAAGAATCCACCATACATTTAGTT 22428 || || || || || || | || || ||| Sbjct 611659 ATCCAGAAGGAGTCGACTCTTCACTTGGTT 611630 Score = 87.8 bits (96), Expect = 2e-12 Identities = 123/173 (71%), Gaps = 0/173 (0%) Strand=Plus/Minus Query 22243 ACCGGTAAAACGGTCACTCTTGAAGTGGAAACCACCGATACCGTGGACGATATCAAACAA 22302 ||||| || || |||| ||||| || || | |||| ||| | ||| | |||| Sbjct 612271 ACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCCGACACCATTGACAACGTCAAGTCG 612212 Query 22303 AAAATTCAAGACAAGGAGGGTATTCCACCCGATCAACAACGTCTTATATTTGCCGGCAAA 22362 || || || || |||||||| || || ||||| || || || | || ||||| || || Sbjct 612211 AAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGCGATTGATCTTTGCTGGTAAG 612152 Query 22363 CAGTTAGAGGATCACCGCACCGTCTCCGATTACAACATTCAAAAAGAATCCAC 22415 ||| | |||||| ||| ||| | || || ||||||||||| || || ||||| Sbjct 612151 CAGCTCGAGGATGGCCGTACCCTTTCGGACTACAACATTCAGAAGGAGTCCAC 612099 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 419727913037605