Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_008603.1 Length=321240 Score E Sequences producing significant alignments: (Bits) Value seq11 87.8 4e-12 seq10 87.8 4e-12 seq8 86.0 1e-11 >seq11 Length=1431289 Score = 87.8 bits (96), Expect = 4e-12 Identities = 147/213 (69%), Gaps = 0/213 (0%) Strand=Plus/Minus Query 279344 AGGTGAGGATCTGTGTGACTGTGATTTCTCGCTCGCATATGGTGGGAAGATTCTGCTAAA 279403 ||| ||||| || ||| |||| |||||||||||| || |||| ||||| || ||||| Sbjct 1255690 AGGCGAGGACCTATGTAACTGCACTTTCTCGCTCGCCTACGGTGCCAAGATCCTCCTAAA 1255631 Query 279404 CTCTACCCGCCTCAACATCAAGCGTGGCAACCGGTATGGTCTCATCGGTCCCAATGGAGC 279463 | || | || ||||||| || || || ||||| ||| ||||||||| ||| | Sbjct 1255630 CCAGACTCATCTGCGTCTCAAGCGCGGTAAGCGTTATGGCCTCTGCGGTCCCAACGGATC 1255571 Query 279464 GGGTAAGAGCACTCTAATGCGCGCCATTGCAAACGGTCAGCTGGAAGGATTTCCTAACGC 279523 || || ||| || ||||| || || || | || | ||||| || || || Sbjct 1255570 CGGAAAATCCACGCTTATGCGTGCGATCAACAATGAGCAAGTCGAAGGCTTCCCCAAGCA 1255511 Query 279524 ATCTGAGGTAAGGACAGTGTATGTAGAGCACGA 279556 | |||||| | ||| |||| ||| || ||||| Sbjct 1255510 AAGTGAGGTCAAGACGGTGTTTGTCGAACACGA 1255478 >seq10 Length=1891208 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Minus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| Sbjct 1538895 AGCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGAC 1538836 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 1538835 CCCCGCATCGGGC 1538823 Score = 87.8 bits (96), Expect = 4e-12 Identities = 63/73 (86%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 142503 AGCCCGGTTAGCTCAGTCGGTAGAGCGCTAGACTCTTAATCTAGTGGTCGTGGGTTCGAG 142562 ||||||||||||||| ||||||||||| ||||||||||||| ||| | |||||||| Sbjct 1580991 AGCCCGGTTAGCTCAATCGGTAGAGCGTGAGACTCTTAATCTCAAGGTTGCGGGTTCGAC 1581050 Query 142563 CCCCACATCGGGC 142575 |||| |||||||| Sbjct 1581051 CCCCGCATCGGGC 1581063 >seq8 Length=2592500 Score = 86.0 bits (94), Expect = 1e-11 Identities = 136/195 (70%), Gaps = 0/195 (0%) Strand=Plus/Minus Query 279696 GTAGGTTCTCTGTCGGGTGGTTGGAAGATGAAGCTGGCCCTCACTCGCGCCATTCTACTG 279755 || || |||||||| || |||||||| |||||||| ||||| |||| || || || | | Sbjct 533281 GTTGGATCTCTGTCTGGAGGTTGGAAAATGAAGCTTGCCCTTGCTCGTGCTATGCTTCAG 533222 Query 279756 CGTGCCGATGTCCTACTGCTTGATGAGCCAACCAACCACATGGACACCACCAACGTAGCC 279815 || ||||| || || ||||| || || ||||| ||| |||| ||||| | || Sbjct 533221 AAAGCTGATGTTCTCCTACTTGACGAACCTACCAATCACTTGGATGTTGCCAACATTGCG 533162 Query 279816 TGGCTAGTGTCCTACCTAACCAGTCTGAAGAATGTTTCTTCCCTCATTGTCTCTCACGAC 279875 ||| | | | || |||| | | | || || | | | ||||| ||||||||| Sbjct 533161 TGGTTGGAGAATTATCTAAAAACCCACACCGATATTACAAGCTTGATTGTTTCTCACGAC 533102 Query 279876 TCTGGCTTCCTAGAT 279890 ||||| ||||| ||| Sbjct 533101 TCTGGTTTCCTCGAT 533087 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1027836576124297