Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_008724.1 Length=288047 Score E Sequences producing significant alignments: (Bits) Value seq6 176 8e-39 seq15 161 2e-34 seq11 154 3e-32 seq3 138 2e-27 >seq6 Length=3640113 Score = 176 bits (194), Expect = 8e-39 Identities = 175/227 (77%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || ||||| ||||| || |||||||| ||||| Sbjct 611841 CCACCACGGAGACGGAGGACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAGTCGGAC 611900 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | |||||||| |||||||| || ||||| ||||| | ||| ||||| ||||| Sbjct 611901 AAAGTTCGTCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGTGGG 611960 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || ||||||||||||||||| | ||||||| ||||| || || | ||||| || Sbjct 611961 ATACCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGTATCGGAAGATTCGACC 612020 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | || || || || ||||| | |||||||||||| |||||||| Sbjct 612021 TCGAGAGTAATCGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 612067 Score = 152 bits (168), Expect = 9e-32 Identities = 171/229 (75%), Gaps = 0/229 (0%) Strand=Plus/Plus Query 68233 TTCCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGG 68292 |||| || || || || | |||||||| || || ||||| || |||||||| || |||| Sbjct 612374 TTCCACCACGGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 612433 Query 68293 AGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTG 68352 |||| || | || || || | ||||| || ||||| || | || || ||||| || | Sbjct 612434 AGAGAGTGCGACCGTCCTCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAG 612493 Query 68353 GAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTA 68412 |||| ||||||||||| || ||||| | ||| ||| ||||| ||||| | || || | Sbjct 612494 GAATACCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATAGTGTCGGAAGACTCGA 612553 Query 68413 CTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 | || | |||||||| || || || |||||||| ||||| |||||||| Sbjct 612554 CCTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAAATCTGCAT 612602 Score = 143 bits (158), Expect = 5e-29 Identities = 168/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || || || || | |||||||| || || ||||| || |||||||| || ||| Sbjct 611613 CCACCACGGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 611672 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 | || | ||||| || |||||||| |||||||| || || | ||| ||||| || || Sbjct 611673 AAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGGG 611732 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 || || |||||||| || ||||| ||| ||| || ||||| || | ||||| || Sbjct 611733 ATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCAATGGTATCCGAAGATTCCACC 611792 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCAT 68461 || | |||||||| ||||| |||||||||||||| || || ||||| Sbjct 611793 TCGAGTGTGATGGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 611839 Score = 134 bits (148), Expect = 3e-26 Identities = 160/217 (74%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || ||||| || | || | ||| || |||||||| || || ||||| || || || Sbjct 612069 CCACCACGAAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAA 612128 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | ||||| || | |||||| || || || || | || || |||||||| || Sbjct 612129 AGGGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGG 612188 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCTGATTCTACT 68414 ||||| ||||| || || ||||| | ||||||| || |||||||| | || || || Sbjct 612189 ATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCGACC 612248 Query 68415 TCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGA 68451 || | ||||||||| || || || ||||||||||||| Sbjct 612249 TCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACGA 612285 >seq15 Length=310649 Score = 161 bits (178), Expect = 2e-34 Identities = 176/231 (76%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 68235 CCTCCGCGAAGGCGCAATACCAAGTGTAGCGTGGACTCTTTTTGGATGTTATAATCGGAG 68294 || || |||||||| | || | ||| || |||||||| || |||||||| || || || Sbjct 111226 CCACCACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 111167 Query 68295 AGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATGAGTCTTTGTTGGTCGGGTGGA 68354 || || | || || || | |||||| |||||||| || || | || |||||||| ||| Sbjct 111166 AGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGA 111107 Query 68355 ATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCGATGGTGTCTGCT-GATTCTAC 68413 || ||||||||||| |||||||| | ||||| |||||||| || ||| || || || Sbjct 111106 ATTCCTTCCTTGTCCTGAATCTTGGATTTGACATTATCGATGGTATC-GCTAGACTCCAC 111048 Query 68414 TTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAATATCTGCATTAT 68464 || | |||||| || || ||||| |||||||| ||||| |||||||| || Sbjct 111047 CTCGAGGGTGATAGTCTTGCCCGTAAGGGTCTTTACGAAAATCTGCATGAT 110997 >seq11 Length=1431289 Score = 154 bits (170), Expect = 3e-32 Identities = 302/442 (68%), Gaps = 12/442 (3%) Strand=Plus/Plus Query 9935 CATGACGCCCGCCTTCTGGTACTCCGATACCCGGCGCTCGAAGAAGTTGGACTTGCCCTC 9994 ||||||||| |||||||||||||| || || |||||||||||||| |||||| | Sbjct 758259 CATGACGCCGGCCTTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCC 758318 Query 9995 GAGGGAAATGAGCTCCATGAAGTCAAAGGGGTTCTCGG--CGCCAAACTGCTTGGGGTAA 10052 ||| || ||| |||||| ||||| || ||||| ||| || | || ||| || Sbjct 758319 GAGAGAGATGTTCTCCATAAAGTCGAACGGGTTGGCGGACCGGTAGAC--CTTCTCGTTG 758376 Query 10053 CCGAGTGCTGTGAAAATGCGGTCAGCCACGAACTCGATGTACTGGCTCATCAGGTCCGAG 10112 ||||| || || | |||||| || ||||||||||||||||| |||| |||| |||| Sbjct 758377 CCGAGGGCGACGAGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTCGAG 758436 Query 10113 TTCATGCCAATCATGCGGCAGGGGATGGCGTCGCAAATGAAGTCCTTTTCGTTGGCGACC 10172 |||||||| | | | ||| || | ||| ||| | ||| |||| ||| | ||| Sbjct 758437 TTCATGCCGAGGAGGGCGCAAGGCAGGGCCTCGGTCAGGAACTCCTGCTCGATCTTGACG 758496 Query 10173 GCTTCCTCGACGATGCTCTTTACCA----CGTCAAGGGACAGCTTGTTCTCGAGCTTCGA 10228 || ||| || ||| || | || | | ||| | | ||||| ||| | || Sbjct 758497 GCGTCCATGATGATCTCCTGAATCATCTGCTTGCTGGGGC-GGTTGTT---GAGGTGGGA 758552 Query 10229 ATACAGGAGCTCTCCAAACTGCTGGTGGAGGCCCTCGTCGCGGCTGATGAACTCGTTGGA 10288 |||| || | || | |||||| |||||||||||| ||||| ||||||||| Sbjct 758553 GAACAGCAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGA 758612 Query 10289 CAAACCCAGACCGGGCATGAGCCCCCGGTTGCGCAGCCAGAAAATGGCGCAGAACGACCC 10348 || || ||||||||||| || || || |||||||| |||| | ||| | || Sbjct 758613 GAAGGTCAAGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACC 758672 Query 10349 GGAGAACAGAAGACCCTCCACG 10370 | ||| | | |||||| ||| Sbjct 758673 GCTGAAGAAGATACCCTCGACG 758694 Score = 84.2 bits (92), Expect = 4e-11 Identities = 150/219 (68%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 225779 TCGTGGTCCACGTACACCGTCCGGAGCTGAGAAGCATCGGGGAAGCCCTCCAGCTGGCCA 225838 ||||| || || |||||||| || || | | ||||||||| || | || || Sbjct 1255478 TCGTGTTCGACAAACACCGTCTTGACCTCACTTTGCTTGGGGAAGCCTTCGACTTGCTCA 1255537 Query 225839 TTTGCAATCGCACGGAGCAGGGTACTCTTGCCCGCGCCGTTGGGACCGATGAGGCCGTAA 225898 || |||||||| | || || || || | |||||||||||| |||||| ||| Sbjct 1255538 TTGTTGATCGCACGCATAAGCGTGGATTTTCCGGATCCGTTGGGACCGCAGAGGCCATAA 1255597 Query 225899 TGATTCCCGCGCTTGATGTTGAGGCGCGTGGAGTTCAGGAGGATCTTGCCACCATAGGCA 225958 | || |||||||||| || | || ||| |||||||||||| |||| ||||| Sbjct 1255598 CGCTTACCGCGCTTGAGACGCAGATGAGTCTGGTTTAGGAGGATCTTGGCACCGTAGGCG 1255657 Query 225959 AGGGAGAACTCGCAATCGCACAGGTCCTCACCCTCCTCG 225997 || ||||| ||| | || |||||||| || || ||| Sbjct 1255658 AGCGAGAAAGTGCAGTTACATAGGTCCTCGCCTTCTTCG 1255696 >seq3 Length=5105224 Score = 138 bits (152), Expect = 2e-27 Identities = 138/179 (77%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 68274 TTTTGGATGTTATAATCGGAGAGTGTCCTCCCATCTTCTAACTGCTTCCCGGCGAATATG 68333 || |||||||| || || ||||| |||| ||||| || | |||||| || ||||| || Sbjct 833602 TTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 833543 Query 68334 AGTCTTTGTTGGTCGGGTGGAATGCCTTCCTTGTCTTGAATCTTTGCCTTGACGGCCTCG 68393 || | || ||||| || ||||| ||||||||||| |||||||| | |||||| || Sbjct 833542 AGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 833483 Query 68394 ATGGTGTCTGCTGATTCTACTTCCAAGGTGATGGTTTTTCCCGTGAGGGTCTTGACGAA 68452 |||||||| | || || || || | ||||||||| || ||||| |||||||| ||||| Sbjct 833482 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 833424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 921622204155240