Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_009127.1 Length=295146 Score E Sequences producing significant alignments: (Bits) Value seq11 300 3e-76 >seq11 Length=1431289 Score = 300 bits (332), Expect = 3e-76 Identities = 895/1363 (66%), Gaps = 47/1363 (3%) Strand=Plus/Minus Query 244090 GTTCACCACCTGAAACTCTCCCGACAGCACGCGGCGCTGGTAGAGGTTGCTGCTGAGCGG 244149 ||| || ||||| |||||||||| || || || ||| ||||| |||| | || || Sbjct 452900 GTTAACAACCTGGAACTCTCCCGCGAGGACACGACGCGAGTAGATGTTGGAGGTGTAAGG 452841 Query 244150 CTCGATGCTCTCCGTGTTGCCCAGTATCTGCGCCGTGCTCGCAGTCGGCATGGGCGACAC 244209 ||| | || ||| |||| |||| || |||| ||||| || || |||||||| | || Sbjct 452840 CTCAAAGCACTCATTGTTACCCAAGATTTGCGAAGTGCTGGCTGTGGGCATGGGGGCGAC 452781 Query 244210 CAGCAGACTGTTCCTCACGCCGTGCCTCTGGATGCGGAGTCTGAGCTCGTTCCAGTCCCA 244269 || || |||||| | || |||||| || ||| | | | || | ||||||||| Sbjct 452780 CAACAAACTGTTACGGACACCGTGCTGCTTGATCTGCTGCTTTAGACTATCCCAGTCCCA 452721 Query 244270 CATGCCCGAGAGGTCCTCGCGTTTGAGGCCCCACATGTCAAACTGCAGCAGCCCCTTGCT 244329 | || ||| | | |||| |||||||||| | || || | |||| | Sbjct 452720 GA-----GATCGGT----GGGCTTGACATCCCACATGTCGTATTGAAGGATACCCTGGGA 452670 Query 244330 GACGGGGCTGCCCTCGTAGGTCGGGTAGGGACCGTCGCGCTGGGCCAGCTTACAGCTCTC 244389 ||| ||| |||||||||| | | |||||||||| || || |||| | | | Sbjct 452669 GACCGGGGAGCCCTCGTAGCTGGCGTAGGGACCGAGTTCCTTAGCGAGCTCCATGGACGC 452610 Query 244390 -GTCGAGGGCGGCGTAGTAGATGGTCTCGAAGATCATCTTGTTCATGTCGCGGGCCTT-G 244447 ||| ||| |||||| |||||||||||||||||| ||||| ||| | ||| | Sbjct 452609 CGTCAAGG-CGGCGTGGTAGATGGTCTCGAAGAT----TTGTT--TGTTAAGTAACTTAG 452557 Query 244448 CCGCAGGTGAAGGGGATGCCCATC----ATC-ATGAAGACGTCGGCCAGTCCCTGCACGC 244502 || |||| || | ||| ||| | | | ||| | ||||| || || || || | Sbjct 452556 CCTCAGGCGATTCGAATGGGTATCGGAGAGCTAGGAAAGCATCGGCAAGACCTTGGACAC 452497 Query 244503 CGATGCCGATGGGTCTGTGTCGCTTGTTGGAGCGCATGGCTTCGGGCACGGGGTAAAAGT 244562 | | |||||||| | ||| ||| ||||| | || || || |||||||| || Sbjct 452496 CCAATCCGATGGGACGGTGGCGCATGTTGCTGTTGCGAGCCTCAGGTACGGGGTAGTGGT 452437 Query 244563 TGCCGTCGATCACCTTGTTGAGGTTGCGGGTGATCATGCGGACGACGTCGGCCAGCAGCT 244622 || | || || | |||||| || || || || || |||| |||||| || | || Sbjct 452436 TGACCTCAATGATCTTGTTCAGATTTCGCACGACCACCTGGACAACGTCGTGCAACTTCT 452377 Query 244623 GAAAGTCGTACTCGTAGGGATCCTCGGCGATGGTGATCCTCACAAACTCGTTGAGGGCGA 244682 | || ||||| || | ||| || | ||| || | || | ||| | Sbjct 452376 GGAAATCGTAGGCGC---------CCGCGTTGTAG-TCCACATACGAAGGT--AAGGCAA 452329 Query 244683 CGCTGGCCAGGTTGCAGACGGCCACCTCCTCCGAGTTGGTGTACTGGACAATCTCGGTGC 244742 | ||||||||||| || || ||||| || | | ||||| | ||||||||||| Sbjct 452328 GGGAAGCCAGGTTGCACACAGCGACCTCATCAGGAGCCGAGTACTCAATAATCTCGGTGC 452269 Query 244743 AGAGGTTACTGCACTTG--ATGGTGCCCAGGTGCTGGTGATTGGACTTGGCGTTGCAGGC 244800 |||||||| | ||| || || ||||||| || || ||| |||| ||||||| Sbjct 452268 AGAGGTTA--GAACTGCGAATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTG 452211 Query 244801 GTCCTTGTAGAGCATGAAGGGCCCCCCGGTCTCGAGCTGGGCGACGAGGACGCTGTTCCA 244860 |||||||| |||||||| || || ||||| ||| || |||||| | | ||| Sbjct 452210 ATCCTTGTAAAGCATGAATGGGTTACCAGTCTCAGTCTGAGCCTCGAGGATGGCATACCA 452151 Query 244861 GAGGTCCCTAGCCTTGACCGTCCTGCGAGCCTTGCCCTCTGCCTCGTAGCGGGTGTACAG 244920 || | | ||||||||| || ||| | |||||| || ||||| |||||| Sbjct 452150 AAGTTTCTGGGCCTTGACCTTCTGGCGGCCACGGCCCTCGGCTTCGTACTTCTCGTACAG 452091 Query 244921 GGCCTCGAACTCGGGGCCCCAGACCTCGTCTAGGCCGGGGCACGACGCCGGG-CACATGA 244979 ||||||||||| ||| |||| || | ||||| |||||| || ||| ||||||| Sbjct 452090 AGCCTCGAACTCATCGCCGTAGACGTCAGCGAGGCCAGGGCAC-TCGTTGGGACACATGA 452032 Query 244980 GACTCCACTCGCCGCCGTCCTTGACCCTCTGCATGAAGAGGTCGGGGATCCAGAGGGCCT 245039 | |||| || ||| | || || | || |||||| || ||||| |||||||| || Sbjct 452031 GCGTCCATTCACCGTTCTTCTCAACACGCTTCATGAAAAGATCGGGAATCCAGAGAGCAA 451972 Query 245040 GGAAGAGGTCCCTGGTCCTCTGCTCGTCCGAGCCAGTGTTCTTCCTCAGCTCCAAAAAGT 245099 |||| || || | | | || ||| || |||||| | || ||||| || | Sbjct 451971 GGAAAAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTACGGAGATCCAAGAACT 451912 Query 245100 CAAAGACGTCGACGTGCCAGGGCTCCATGTAGACAGCGAGGGCGCCGGGCCGCTTGTTGC 245159 | || || || |||||| ||||| | ||||| || | ||| || || | |||||||| Sbjct 451911 CGAAAACATCCGAGTGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGTCTCTTGTTGC 451852 Query 245160 CTCCCTGGTCCAC-CATCCTCTCGAGCGCGTTGAAGATGCGCAGGGTAGGCACTATGCCG 245218 | |||||||| || ||| || | |||||||| || || |||| || || ||| Sbjct 451851 CACCCTGGTCAACGTATCTGGCCGTG-TTGTTGAAGACACGAAGCATAGGTACAATACCG 451793 Query 245219 TTAGAGTGGCCGTTGGTGCCCTTGATGTAGGCGCCCTTGCCCCTG--AGGTTGCTGATGG 245276 ||||| |||||||| || ||||| | || | | | | | || | | Sbjct 451792 TTAGAAGTACCGTTGGTACCGGCAATGTAAGATCCGGTAGATCGGATACGGTGAACGTTG 451733 Query 245277 ACATGCCTAGTCCGCCGGCGTGCTTGGAGATGAGGGCGCAGCTCTTGATGGTGTCTGCTA 245336 | | || | || || || ||||||||| | || || |||||| |||||| | Sbjct 451732 AGA--CCAATACCACCCGCCATCTTGGAGATCATAGCACAAGTCTTGAGGGTGTCATAGA 451675 Query 245337 TGCCCTCCATGCTGTCCGACTTCATGTTGAGCAGAAAGCAGGAGGACAGCTGGGGCTTGG 245396 | ||||| |||||||| |||||||| | || || || ||||| ||||| | || || Sbjct 451674 TACCCTCAATGCTGTCATCCTTCATGTCTACAAGGAAACAAGAGGAAAGCTGAGCCTGGG 451615 Query 245397 GGCTGCACGAGTTGAACAGAGTGGGGCTGGCGTGGGTAAAGTA 245439 || | | | |||||| || |||||| ||||||||| || || Sbjct 451614 GGGTACCGGCGTTGAAAAGGGTGGGGGAGGCGTGGGTGAAATA 451572 Score = 282 bits (312), Expect = 8e-71 Identities = 379/514 (74%), Gaps = 29/514 (6%) Strand=Plus/Minus Query 42645 AAGAAGGCGGACTGGGCGCTCAACTGGATCGAGAGTCCCGAC--GCA----ACGTTCGGC 42698 |||||||| |||||||| ||| ||||||| ||||| ||| || |||| Sbjct 758771 AAGAAGGCCGACTGGGCTCTCCGATGGATCG------CCGACAAGCAGTCGACTTTCGCT 758718 Query 42699 GAGAGGCTGGTAGCCTTTACCGCCGTCGAGGGCATCTTCTTCTCGGGCGCCTTCGCCTCC 42758 || | || | ||||| ||||||||||||| ||||||||| || |||||||||||| Sbjct 758717 CAGCGTTTGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCC 758658 Query 42759 ATCTTCTGGCTCAAGCAG-AAGGTGTCGATGCCCGGACTCACCTTCTCGAACGAACTCAT 42817 ||||||||||||||| || ||| || |||||||| | |||||||| ||||| ||||| Sbjct 758657 ATCTTCTGGCTCAAGAAGCGCGGTCTC-ATGCCCGGCTTGACCTTCTCCAACGAGCTCAT 758599 Query 42818 CAGCAGGGACGAGGGGCTGCATAGGGACTTTGCCTGCCTCCTGTTCTCGAGCCACCTCAG 42877 | | | |||||||| || || | ||||| |||||||| |||||||| |||||||| Sbjct 758598 CTCCCGCGACGAGGGTCTCCACACCGACTTCGCCTGCCTGCTGTTCTC---CCACCTCA- 758543 Query 42878 GCACAA--GCCCTCG-AAGGAGCGGGTCCGGGCCATCATCACGGAGGCCGTGGAGATCGA 42934 |||| |||| | ||| || | | | || ||||||| ||| ||||| ||||||| Sbjct 758542 --ACAACCGCCCCAGCAAGCAGATGATTCAGGAGATCATCATGGACGCCGTCAAGATCGA 758485 Query 42935 GAAGGAGTTCCTCACGCAGTCGCTGCCCGTGTCCCTGGTCGGCATGAACCACGACCTCAT 42994 | |||||||||| || || | ||||| |||| ||||||||||| ||||||| Sbjct 758484 GCAGGAGTTCCTGACCGAGGCCCTGCCTTGCGCCCTCCTCGGCATGAACTCGAACCTCAT 758425 Query 42995 GTGCAAGTACATCCAGTACGTCGCCGACCATCTCCT-GT-GCCAGATGGGTCTC-AGCCG 43051 | |||||||| ||| ||||||||||| ||||| || ||| | || | || | Sbjct 758424 GAAGCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGTCGCC--CTCGGCAACGAGAAG 758367 Query 43052 CCTCTACAACACGCCGTGCCCCTTCGACTTTATGGAGAACATCTCGTTGGAGGGCAAGAC 43111 ||||| | | ||| ||||||||||||||||||||||| | | |||||||| Sbjct 758366 -GTCTACCGGTCCGCCAACCCGTTCGACTTTATGGAGAACATCTCTCTCGGCGGCAAGAC 758308 Query 43112 CAACTTTTTCGAGAAGCGCGTCGCCGACTACCAG 43145 |||||| |||||||||||||||| ||| |||||| Sbjct 758307 CAACTTCTTCGAGAAGCGCGTCGGCGAGTACCAG 758274 Score = 111 bits (122), Expect = 3e-19 Identities = 228/336 (68%), Gaps = 11/336 (3%) Strand=Plus/Minus Query 42300 ATCTGGTCCATGTACAAGAAGGCGCAGTTCTCCAACTGGACCGCCGAGGAGATTGACCTG 42359 |||||| |||||||||||||| || ||| |||||| ||||||||||| || || Sbjct 759187 ATCTGGCAGATGTACAAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATCGATCTT 759128 Query 42360 GCCAAGGACACGGCCGGCTGGGAGTCACTGTCT----GAGAACGAAAAGTTTTTCCTCAA 42415 ||||||| | | | | ||| || | | ||| | || |||| ||| || Sbjct 759127 TCCAAGGAT-CTCCACGATTGGAACAACAGAATCAACGAGGATGAGAAGTACTTCATCTC 759069 Query 42416 AAACATACTGGCCTTCTTCGCCGCCTCTGACGGCATAGTCAATGAGAACCTGGCCACCAG 42475 |||| || |||||||||||||| || ||||| || ||||| |||||||| | | | Sbjct 759068 TCACATCCTTGCCTTCTTCGCCGCTTCGGACGGTATCGTCAACGAGAACCTTGTCGAGCG 759009 Query 42476 GTTCATGAAAGAGGTGCAGTACTTTGAGGCGCGCTGCTTCTACGGCTTCCAGATAGCCAT 42535 |||| |||||| ||| | || || || ||||||||||| |||||||| || Sbjct 759008 TTTCAGCGGAGAGGTTCAGATCCCCGAAGCTCGATGCTTCTACGGTTTCCAGATCATGAT 758949 Query 42536 AGAGAACGTGCACTCTGAGGTGTACGCCAAACTGCTCA---ACACGTACATCCTGGATCC 42592 |||||| | ||||| ||| ||| | || |||| |||| |||||| ||| || Sbjct 758948 GGAGAACATCCACTCCGAGACCTACTC---TCTTCTCATTGACACCTACATCAAGGAGCC 758892 Query 42593 CGTCGAGCGTAACGGGCTGTTCAAGGCCATGGAGAC 42628 || | || | | || ||||| ||||| || || Sbjct 758891 CGCCCAGAAGACCCACCTTTTCAACGCCATTGATAC 758856 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 944338999327920