Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_009898.1 Length=368683 Score E Sequences producing significant alignments: (Bits) Value seq6 149 1e-30 seq15 131 4e-25 seq3 102 2e-16 seq11 86.0 1e-11 >seq6 Length=3640113 Score = 149 bits (164), Expect = 1e-30 Identities = 169/227 (74%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| ||||| | || || | |||| ||| |||||| || || |||||||||| Sbjct 611841 CCACCACGGAGACGGAGGACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAGTCGGAC 611900 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 | || ||||| ||||| || || ||||| |||||||| ||||| || || | |||| Sbjct 611901 AAAGTTCGTCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGTGGG 611960 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || || || || || |||| || ||||| || |||| |||| ||||| || Sbjct 611961 ATACCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGTATCGGAAGATTCGACC 612020 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCAT 288473 ||||| || |||||||| || |||| ||||||||||| |||||||| Sbjct 612021 TCGAGAGTAATCGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 612067 Score = 89.7 bits (98), Expect = 1e-12 Identities = 150/217 (69%), Gaps = 0/217 (0%) Strand=Plus/Plus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | ||| || || || | ||| || || || || || ||||| | Sbjct 612069 CCACCACGAAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAA 612128 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || || || || | || || || || ||||||| ||||| || ||| Sbjct 612129 AGGGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGG 612188 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 || || || ||||||||||| |||| || ||||| || || | ||| || || || Sbjct 612189 ATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCGACC 612248 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGA 288463 || || ||||| ||||| ||||| || |||||||||| Sbjct 612249 TCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTGACGA 612285 >seq15 Length=310649 Score = 131 bits (144), Expect = 4e-25 Identities = 167/230 (73%), Gaps = 0/230 (0%) Strand=Plus/Minus Query 288247 CCACCGCGGAGTCTAAGTACGAGATGAATCGTGCTTTCTTTTTGGATATTATAGTCGGCG 288306 ||||| || || | || ||||| |||| ||| || || ||||| || ||||| | Sbjct 111226 CCACCACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAA 111167 Query 288307 AGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATCAGACGCTGTTGAGAATCTGGG 288366 || || || ||||| || | || || || ||||||||||||||||| || || Sbjct 111166 AGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGA 111107 Query 288367 ATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCTATAGAATCGCTCGATTCTACT 288426 |||||||| || ||||| || || | ||| || || || || | |||||| || || || Sbjct 111106 ATTCCTTCCTTGTCCTGAATCTTGGATTTGACATTATCGATGGTATCGCTAGACTCCACC 111047 Query 288427 TCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAATATCTGCATTAT 288476 ||||| ||||| ||||| || || || ||||| ||||| |||||||| || Sbjct 111046 TCGAGGGTGATAGTCTTGCCCGTAAGGGTCTTTACGAAAATCTGCATGAT 110997 >seq3 Length=5105224 Score = 102 bits (112), Expect = 2e-16 Identities = 130/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 288286 TTTTGGATATTATAGTCGGCGAGCGTGCGTCCGTCTTCTAATTGTTTTCCTGCGAAGATC 288345 || ||||| || ||||| | ||| || || || || || | || ||||| ||||||||| Sbjct 833602 TTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 833543 Query 288346 AGACGCTGTTGAGAATCTGGGATTCCTTCTTTATCCTGGATTTTCGCTTTCACGTTTTCT 288405 |||||||| || | || |||||||| || ||||| || || | || || || || Sbjct 833542 AGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 833483 Query 288406 ATAGAATCGCTCGATTCTACTTCGAGCGTGATCGTCTTCCCGGTCAGAGTCTTGACGAA 288464 || | ||| || || || ||||| ||||| ||||| || ||||| ||||| ||||| Sbjct 833482 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 833424 >seq11 Length=1431289 Score = 86.0 bits (94), Expect = 1e-11 Identities = 122/172 (71%), Gaps = 0/172 (0%) Strand=Plus/Minus Query 269153 TCGGTATGAATGCCGATCTCATGAATCAATATATCGAATTCGTGGCTGATCGTATCTTCA 269212 |||| ||||| | | |||||||| || || ||||| ||||| || || || || || Sbjct 758446 TCGGCATGAACTCGAACCTCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCG 758387 Query 269213 CGGCACTCGGTTATGAGAAAGTGTACAATTCGAAGAATCCCTTCGCCTTTATGGAACTAA 269272 || ||||| | ||||| || ||| || || || |||| ||||||||| | Sbjct 758386 TCGCCCTCGGCAACGAGAAGGTCTACCGGTCCGCCAACCCGTTCGACTTTATGGAGAACA 758327 Query 269273 TTTCGCTCGAAGGAAAGACGAACTTCTTCGAAAAGCGTGTCAGCGACTATCA 269324 | || |||| || ||||| ||||||||||| ||||| ||| |||| || || Sbjct 758326 TCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 758275 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1179654143056526