Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_011183.1 Length=154641 Score E Sequences producing significant alignments: (Bits) Value seq11 215 5e-51 >seq11 Length=1431289 Score = 215 bits (238), Expect = 5e-51 Identities = 611/925 (66%), Gaps = 18/925 (2%) Strand=Plus/Plus Query 93715 AATTACGATTACTTTGCCTTCAAAACTCTGGAGAAGTCGTACCTCCTCAAGATGGATGGC 93774 || ||| | ||||||| |||||| ||| ||||| || ||||| |||||| | ||||| Sbjct 451407 AACTACCAATACTTTGGCTTCAAGACTTTGGAGCGATCATACCTTCTCAAGCTCAATGGC 451466 Query 93775 AGGGTTTCCGAGCGACCGCACCAGCTGCTGATGCGCGTCGCCATCGGGATTCACGGCCAC 93834 | || ||||||| ||||| || || | ||||| || ||| |||| || || || Sbjct 451467 AAAATTGCCGAGCGGCCGCAGCACATGATCATGCGTGTTGCCGTCGGTATCTGGGGTGAC 451526 Query 93835 GACATGCCGAATGTTTTGCGGGCTTTCAGAGACATGCGGGACAAGAGGTATACCATGGCC 93894 ||| | || || | | | | || |||| ||| | ||| ||| Sbjct 451527 GACGTTGAAAAGGTCATTGAGACATACAATCTCATGTCCAGCAAATATTTCACCCACGCC 451586 Query 93895 ACCCCGACCCTGTTCAACGCGGGGACCCCGGTGCCACAGATGTCTTCGTGTTTCCTGAT- 93953 |||| ||||| |||||||| || ||||| | | ||| | || || |||||||| | Sbjct 451587 TCCCCCACCCTTTTCAACGCCGGTACCCCCCAGGCTCAGCTTTCCTCTTGTTTCCTTGTA 451646 Query 93954 GACGAACAAGGCCGACTCCATCTCCGGAATTTTCGACAGCCTCAAGGACTGTGCGACCAT 94013 ||| | |||| ||| ||| || || | |||| ||||||| ||||| | || Sbjct 451647 GAC-ATGAAGGATGACAGCATTGAGGGTATCTATGACACCCTCAAGACTTGTGCTATGAT 451705 Query 94014 CTCAAAATACGCGGGGGGAATCGGGATCAGTGTCCACGACGTA--CGTGCCAGGGGTTCC 94071 ||| || ||||| || || || ||| || ||| |||| || | | || || Sbjct 451706 CTCCAAGATGGCGGGTGGTATTGGTCTCAACGTTCAC--CGTATCCGATCTACCGGATCT 451763 Query 94072 TACATCCGCGGTACCAATGGCACCTCCAACGGCCTCGTCCCTATGCTCCGGGTCTTCAAC 94131 ||||| ||||||||| || || || ||||| | || |||||||| || ||||||||| Sbjct 451764 TACATTGCCGGTACCAACGGTACTTCTAACGGTATTGTACCTATGCTTCGTGTCTTCAAC 451823 Query 94132 AACGCGGCGCGCTACGTGGACCAGGGTGGTGGGAGGAGGAAGGGTTCTTTCGCGGTCTAT 94191 ||| |||| | ||||| ||||||||||| | ||| ||| | || || |||| Sbjct 451824 AACACGGCCAGATACGTTGACCAGGGTGGCAACAAGAGACCTGGTGCCTTTGCCATCTAC 451883 Query 94192 CTCGAGCCCTGGCACGCGGACGTGCAGGCTTTCATCGACCTGCGAAAGAACCACGGCAAC 94251 |||||||| |||||| |||| || | ||| | || || || ||||||||||| || Sbjct 451884 CTCGAGCCGTGGCACTCGGATGTTTTCGAGTTCTTGGATCTCCGTAAGAACCACGGAAAG 451943 Query 94252 GATCTGGAGAGGGCCAGAGACCTCTTCTACGCTCTCTGGGTGCCAGACCTTTTTATGAAA 94311 || | | || | || || ||| ||||||||| | || || ||||| ||||| Sbjct 451944 GAGGAAGTTCGCGCTCGCGATCTTTTCCTTGCTCTCTGGATTCCCGATCTTTTCATGAAG 452003 Query 94312 CGCGTCGAGAAAAACTCCGCCTGGAGTCTTTTTTGTCCCAATGAATGTCCCGGACTGTCC 94371 || || ||||| ||| | |||| || | |||||||| || || || || || | Sbjct 452004 CGTGTTGAGAAGAACGGTGAATGGACGCTCATGTGTCCCAACGAGTGCCCTGGCCTCGCT 452063 Query 94372 GACGTTT--GTGGATCGCGTTTTGAAGACTTGTATGCTCGTTACGAATCGCAGGG-CAAG 94428 ||||| | | ||| | | || || | |||| | |||||| | |||| | | Sbjct 452064 GACGTCTACGGCGAT-GAG-TTCGAGGCTCTGTACGAGAAGTACGAAGCCGAGGGCCGTG 452121 Query 94429 GC--CAGGAAGGTTATGGATGCTAGGAAGCTGTGGGATCAGATCGTGGACGTACAGGTGG 94486 || | |||||| | | || ||| || ||| || ||| | || | ||| | Sbjct 452122 GCCGCCAGAAGGTCA---AGGCCCAGAAACTTTGGTATGCCATCCTCGAGGCTCAGACTG 452178 Query 94487 AGACGGGTACGCCCTACATCTTGTTCAAGGA-CTCTGTCAACGCCAAGTCCAACCAGCAG 94545 |||| |||| || | ||| | | |||||| | ||| |||| |||| ||||||| || Sbjct 452179 AGACTGGTAACCCATTCATGCTTTACAAGGATCACTG-CAACCGCAAGAGCAACCAGAAG 452237 Query 94546 CACCTCGGGGTGATCAAGAGCTCGAATCTGTGCACCGAGATTGTCGAGTATACTTCTCCG 94605 |||| || || || || || || |||||||||||| | ||||| | |||| Sbjct 452238 AACCTGGGAACTATTCGCAGTTCTAACCTCTGCACCGAGATTATTGAGTACTCGGCTCCT 452297 Query 94606 GACGAGATTGCTGTGTGTAACCTGG 94630 || ||| | |||||||| ||||||| Sbjct 452298 GATGAGGTCGCTGTGTGCAACCTGG 452322 Score = 102 bits (112), Expect = 8e-17 Identities = 257/383 (67%), Gaps = 6/383 (2%) Strand=Plus/Plus Query 94993 CAGGGCATTTTTCAGTTCGACCTCTGGGGTGTGAAGCCCTCGGGTCTGTACGACTGGGAA 95052 ||||| || |||| | |||| | |||| ||| |||||| | | ||| | |||||||| Sbjct 452673 CAGGGTATCCTTCAATACGACATGTGGGATGTCAAGCCCACCGATCTCTGGGACTGGGAT 452732 Query 95053 GCTCTAC-GC-GCTGATGTTATCAAACACGGTGTGAAAAACGCGCTGCTTGTGGCCCCCA 95110 |||| || || ||| | || |||||||| ||| || | || ||||||| Sbjct 452733 AGTCTAAAGCAGCAGATCA-AGCAG-CACGGTGTCCGTAACAGTTTGTTGGTCGCCCCCA 452790 Query 95111 TGCCCACGGCCTCCACGGCGCAGATCCTTGGCAACAACGAGTCGTTCGAACCCTTCACCT 95170 ||||||| ||| ||| |||| ||| | || ||||| |||| || || || | ||||| Sbjct 452791 TGCCCACAGCCAGCACTTCGCAAATCTTGGGTAACAATGAGTGCTTTGAGCCTTACACCT 452850 Query 95171 CCAACGTGTACAACAGGCGGGTGCTCGCCGGGGAATTCCCCGTCATCAACAAGCACCTCC 95230 ||||| | ||| | || || ||||| || || |||| || | ||| || | Sbjct 452851 CCAACATCTACTCGCGTCGTGTCCTCGCGGGAGAGTTCCAGGTTGTTAACCCTTGGCTAC 452910 Query 95231 TACGGGACC-TGACGTCTCTGGGTGTGTGGGGTGACAAGGTCAAGAACCAACTGCTACGC 95289 | ||||| || || | ||||| ||||| |||||| | ||||||| | | | Sbjct 452911 TCAAGGACCTTGTCGAC-ATGGGTCTGTGGTCTGACAACATGAAGAACCGCATTATTGCC 452969 Query 95290 GCCAACGGCTCCGTCCAGAACATCCCGCAAATACCGGAGGACATCAAGGCGCTCTACAAG 95349 | || || ||||||||||||| || || | || |||||||| | |||||| Sbjct 452970 GAAGGTGGTTCGATCCAGAACATCCCCAGCATTCCTGCTGATATCAAGGCATTGTACAAG 453029 Query 95350 ACCGTGTGGGAGATCCCGCAGCG 95372 || || ||||| ||| | ||||| Sbjct 453030 ACGGTTTGGGAAATCTCTCAGCG 453052 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 494723094871320