Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_011345.1 Length=155122 Score E Sequences producing significant alignments: (Bits) Value seq15 122 9e-23 seq11 113 4e-20 seq6 102 8e-17 >seq15 Length=310649 Score = 122 bits (134), Expect = 9e-23 Identities = 146/196 (74%), Gaps = 2/196 (1%) Strand=Plus/Minus Query 138421 GACTCCTTTTGAATGTTGTAGTCGCTCATAGTACGCGAGTCCTCGAGTTGTTTACCGGAA 138480 |||||||| || ||||||||||| | |||||| ||||||||| || || |||| Sbjct 111193 GACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCG 111134 Query 138481 TAGATTAGACGCTGTTGGTCCGGAGGTATACCTTCTTTGTCGGTGATTTTTTGTTTTAAT 138540 |||| |||||||| ||||| ||||| || ||||| ||||| ||| | || | ||| | Sbjct 111133 AAGATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCC-TGAATCTTGGATTTGAC 111075 Query 138541 TGT-TCCACGGTGTCGGTCGACTCCACCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTT 138599 | || | ||| ||| | ||||||||||||| || | || || || || || || || Sbjct 111074 ATTATCGATGGTATCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTAAGGGTCTT 111015 Query 138600 TACAAAAATCTGCATG 138615 ||| |||||||||||| Sbjct 111014 TACGAAAATCTGCATG 110999 >seq11 Length=1431289 Score = 113 bits (124), Expect = 4e-20 Identities = 300/454 (66%), Gaps = 27/454 (6%) Strand=Plus/Minus Query 52396 AGCGCATGGTGGCCTTCGCCATAGTCGAGGGCGTGtttttttCCGGCAGCTTTGCCGCCA 52455 |||| || | ||||||||| |||||||| | || || ||| ||| ||| ||| Sbjct 758716 AGCGTTTGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCA 758657 Query 52456 TCTTTTACATTAAAACGAAAGGCATAATGCCCGGCCTGACGTTCAGCAACGAGTTGATAT 52515 |||| | | || | | || | ||||||||| |||| ||| ||||||| | || | Sbjct 758656 TCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAGCTCATCT 758597 Query 52516 CGCGCGACGAAGGACTGCACACGGACTTTGCGTGCCT---------CTACTACAAGACGC 52566 | |||||||| || || ||||| ||||| || ||||| | || ||| | | Sbjct 758596 CCCGCGACGAGGGTCTCCACACCGACTTCGCCTGCCTGCTGTTCTCCCACCTCAACAACC 758537 Query 52567 GCGTGACCGAAAAATTGGATTCGGACACGATCCTGAGCATGTTCAAGGAGGCGGTGGCTA 52626 || | | | | || |||| | ||| || ||| ||| || || | Sbjct 758536 GCCCCAGCAAGCAGATG-ATTCAG----------GAG-ATCATCATGGACGCCGTCAAGA 758489 Query 52627 TCGAAAAGGAGTTTTTTACGGCCGCGCTGCCGGTCGAGCTGCTGGGCATGAACGCGCAGT 52686 |||| ||||||| | || | || ||||| || || || ||||||||| || | Sbjct 758488 TCGAGCAGGAGTTCCTGACCGAGGCCCTGCCTTGCGCCCTCCTCGGCATGAACTCGAACC 758429 Query 52687 CCATGTGCGAGTACATCGAGTTTGTGGCGGATCGTCTGTTGGTGCAGCTCGGGCAGCCA- 52745 |||| ||||||||||||| || || || || || | || ||||| || | | Sbjct 758428 TCATGAAGCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGTCGCCCTCGG-CAACGAG 758370 Query 52746 AAGTACTTCAACGCTCG--CAATCCGTTTGAGTTTATGAACAACATTTCGCTTGAGGGCA 52803 ||| || | || || ||| ||||| || |||||| | ||||| || || | |||| Sbjct 758369 AAGGTCTAC--CGGTCCGCCAACCCGTTCGACTTTATGGAGAACATCTCTCTCGGCGGCA 758312 Query 52804 AGACCAACTTTTTCGAGAAGCGAGTCGGCGAGTA 52837 |||||||||| ||||||||||| ||||||||||| Sbjct 758311 AGACCAACTTCTTCGAGAAGCGCGTCGGCGAGTA 758278 >seq6 Length=3640113 Score = 102 bits (112), Expect = 8e-17 Identities = 162/229 (71%), Gaps = 4/229 (2%) Strand=Plus/Plus Query 138388 CCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCTC 138447 || || || | ||| | || || || | | | |||||||| || |||||||||||| Sbjct 612376 CCACCACGGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAG 612435 Query 138448 ATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGGT 138507 | ||| || |||||||||||| ||||| | | || | ||||| ||||| ||||| Sbjct 612436 AGAGTGCGACCGTCCTCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAGGA 612495 Query 138508 ATACCTTCTTTGTCGGTGATTTTTTGTTTTAA--TTGTTCCACGGTGTCGGTCGACTCCA 138565 |||||||| ||||| || | || | |||| ||| || | ||||||| ||||| | Sbjct 612496 ATACCTTCCTTGTC-CTGGATCTTCGACTTAACGTTG-TCGATAGTGTCGGAAGACTCGA 612553 Query 138566 CCTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 |||| | || | || || || || || || || || ||||||||||| Sbjct 612554 CCTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAAATCTGCAT 612602 Score = 96.9 bits (106), Expect = 3e-15 Identities = 158/228 (69%), Gaps = 0/228 (0%) Strand=Plus/Plus Query 138387 GCCGCCTCGCAAACGCAAAACTAAATGTATGTTTGACTCCTTTTGAATGTTGTAGTCGCT 138446 ||| || || | ||| | ||| || || | | |||||||| || |||||||||||||| Sbjct 611612 GCCACCACGGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCT 611671 Query 138447 CATAGTACGCGAGTCCTCGAGTTGTTTACCGGAATAGATTAGACGCTGTTGGTCCGGAGG 138506 || ||| || ||||| | || ||||||| |||| ||||| || ||||| || || Sbjct 611672 CAAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGG 611731 Query 138507 TATACCTTCTTTGTCGGTGATTTTTTGTTTTAATTGTTCCACGGTGTCGGTCGACTCCAC 138566 ||||| || ||||| ||| || || | | || | ||| || | || ||||| Sbjct 611732 GATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCAATGGTATCCGAAGATTCCAC 611791 Query 138567 CTCGACCGTCAGCGTTTTACCAGTCAGAGTTTTTACAAAAATCTGCAT 138614 ||||| || | || || || || || || || ||||| || ||||| Sbjct 611792 CTCGAGTGTGATGGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 611839 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 496262294544240