Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_011616.1 Length=148634 Score E Sequences producing significant alignments: (Bits) Value seq6 122 8e-23 seq11 114 1e-20 seq15 93.3 4e-14 >seq6 Length=3640113 Score = 122 bits (134), Expect = 8e-23 Identities = 166/229 (72%), Gaps = 2/229 (1%) Strand=Plus/Plus Query 126886 TCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCC 126945 |||||| || | || | ||||| || | |||||||| || || || ||||| ||| Sbjct 612375 TCCACCACGGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGA 612434 Query 126946 CATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGG 127005 | |||||| || || || || || |||||| | |||||||||||||| || ||||| Sbjct 612435 GAGAGTGCGACCGTCCTCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAGG 612494 Query 127006 TATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGA 127064 || || ||||||||| ||| ||| ||| | |||| |||| ||||| | | ||||| Sbjct 612495 AATACCTTCCTTGTCCTGGATCTTCGACTTAACGTTG-TCGATAGTGTCGGAAGACTCGA 612553 Query 127065 CTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | || | || | || |||||||| || || || || ||||||||||| Sbjct 612554 CCTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAAATCTGCAT 612602 Score = 113 bits (124), Expect = 4e-20 Identities = 138/186 (74%), Gaps = 2/186 (1%) Strand=Plus/Plus Query 126917 GTAGACTCTTTTTGAATATTGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCA 126976 || ||||| || ||||| ||||| || | || || ||| || ||||| || ||| Sbjct 612099 GTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCGAGCTGCTTACCA 612158 Query 126977 GCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTG 127036 || |||||||||||||||| |||||||| ||||||||||| ||| ||| ||| |||| Sbjct 612159 GCAAAGATCAATCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTCGACTTG 612218 Query 127037 A-GTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGT 127095 | |||| || | |||||| | | |||||| || | ||| | || |||||||| || || Sbjct 612219 ACGTTG-TCAATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTAAGGGT 612277 Query 127096 TTTTAC 127101 || || Sbjct 612278 CTTGAC 612283 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 126887 CCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATATTGTAATCGCCC 126946 ||||| || | || | ||||| || | || || ||||| ||||| || || ||| | Sbjct 611841 CCACCACGGAGACGGAGGACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAGTCGGAC 611900 Query 126947 ATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGT 127006 | || || ||| || | ||| ||||||||| |||| | || ||||| || || || Sbjct 611901 AAAGTTCGTCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGTGGG 611960 Query 127007 ATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCCGTACTCTCGAC 127065 || ||||||||||| || ||| ||||| |||| |||| || || | | ||||| Sbjct 611961 ATACCCTCCTTGTCTTGAATCTTCGACTTGACGTTG-TCGATAGTATCGGAAGATTCGAC 612019 Query 127066 TTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 |||| || | ||| || || |||| || || || || |||||||| Sbjct 612020 CTCGAGAGTAATCGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 612067 Score = 87.8 bits (96), Expect = 2e-12 Identities = 165/239 (69%), Gaps = 3/239 (1%) Strand=Plus/Plus Query 126876 ACTATACTGCTCCACCGCGTAATCGCAACACCAAATGTATCGTAGACTCTTTTTGAATAT 126935 ||| ||||| ||||| || | || | ||||| || | || ||||| || || || | Sbjct 611603 ACTCTACTGG-CCACCACGGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGT 611661 Query 126936 TGTAATCGCCCATCGTGCGAGAATCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCT 126995 |||| |||| || || || ||| || | ||| || || ||| |||| | || |||| Sbjct 611662 TGTAGTCGCTCAAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATAAGACGTTGCT 611721 Query 126996 GATCGGGAGGTATGCCCTCCTTGTCCGTGATTTTCTGCTTGA-GTTGTTCGACGGTGTCC 127054 | || || || || |||||||||||| ||| || ||| | |||| || | ||| ||| Sbjct 611722 GGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTG-TCAATGGTATCC 611780 Query 127055 GTACTCTCGACTTCGACGGTCACCGTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCAT 127113 | | || || |||| || | || || ||||| || || || ||||| || ||||| Sbjct 611781 GAAGATTCCACCTCGAGTGTGATGGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 611839 >seq11 Length=1431289 Score = 114 bits (126), Expect = 1e-20 Identities = 295/446 (66%), Gaps = 15/446 (3%) Strand=Plus/Minus Query 47139 CGTTTGATCGCTTTCGCCATCGTCGAGGGCGTCTTCTTCTCGGGCAGCTTTGCGGCGATA 47198 ||||||||||| |||||| ||||||||| |||||||| || ||| || | || Sbjct 758714 CGTTTGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATC 758655 Query 47199 TTTTACATGAAAACCAAAGGAGTTATGCCCGGCCTCACGTTTAGCAACGAGCTAATCTCG 47258 || | | || | || | ||||||||| | || || ||||||||| ||||| Sbjct 758654 TTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAGCTCATCTCC 758595 Query 47259 AGAGACGAAGGCCTGCACACCAACTTTGCCTGTCTC---TACTACAACA-CTAGAGTCGA 47314 | ||||| || || |||||| |||| ||||| || | || | || | | | || Sbjct 758594 CGCGACGAGGGTCTCCACACCGACTTCGCCTGCCTGCTGTTCTCCCACCTCAACAACCGC 758535 Query 47315 TCAA--AAGTTGGACGTGCCCACCGTCAGCGACATGTTTGCCGAAGCCGTCGCCATTGAG 47372 | | ||| | | |||| || || | || |||||| || ||| Sbjct 758534 CCCAGCAAGCAGATGAT--------TCAG-GAGATCATCATGGACGCCGTCAAGATCGAG 758484 Query 47373 ATGGAGTTTTTCGCCGAGGCTCTGCCCGAATCTTTAGTGGGAATGAACGCGGAGATGATG 47432 |||||| | ||||||| ||||| | | | || |||||| || | | ||| Sbjct 758483 CAGGAGTTCCTGACCGAGGCCCTGCCTTGCGCCCTCCTCGGCATGAACTCGAACCTCATG 758424 Query 47433 AGAAAGTACATCGAATTTGTCGCCGACCGCCTGCTCGTTCAGCTAAAGTATCCCAAGATT 47492 | |||||||||| || |||||||||||||| ||||| || | ||| | Sbjct 758423 AAGCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGTCGCCCTCGGCAACGAGAAGGTC 758364 Query 47493 TACCACACCGAGAATCCATTCGAGTTTATGAACAACATTTCGCTCGAGGGCAAGACCAAC 47552 |||| ||| || || ||||| |||||| | ||||| || |||| |||||||||||| Sbjct 758363 TACCGGTCCGCCAACCCGTTCGACTTTATGGAGAACATCTCTCTCGGCGGCAAGACCAAC 758304 Query 47553 TTTTTCGAGAAGCGCGTCGGCGAATA 47578 || |||||||||||||||||||| || Sbjct 758303 TTCTTCGAGAAGCGCGTCGGCGAGTA 758278 >seq15 Length=310649 Score = 93.3 bits (102), Expect = 4e-14 Identities = 114/156 (73%), Gaps = 0/156 (0%) Strand=Plus/Minus Query 126959 TCGTCTAGCTGTTTTCCAGCGTAGATCAATCGCTGCTGATCGGGAGGTATGCCCTCCTTG 127018 || || ||||| || || ||| |||||| |||||||| |||||||| || || |||||| Sbjct 111154 TCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTG 111095 Query 127019 TCCGTGATTTTCTGCTTGAGTTGTTCGACGGTGTCCGTACTCTCGACTTCGACGGTCACC 127078 ||| || || |||| | |||| ||| || || ||| || |||| ||| | Sbjct 111094 TCCTGAATCTTGGATTTGACATTATCGATGGTATCGCTAGACTCCACCTCGAGGGTGATA 111035 Query 127079 GTTTTGCCGGTCAGAGTTTTTACAAAAATCTGCATG 127114 || ||||| || || || ||||| |||||||||||| Sbjct 111034 GTCTTGCCCGTAAGGGTCTTTACGAAAATCTGCATG 110999 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 475500698956080