Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_012639.1 Length=141291 Score E Sequences producing significant alignments: (Bits) Value seq6 105 6e-18 seq11 86.0 6e-12 >seq6 Length=3640113 Score = 105 bits (116), Expect = 6e-18 Identities = 164/232 (71%), Gaps = 2/232 (1%) Strand=Plus/Plus Query 45111 ATTCCTCCGCGGAGCCTCAACACTAGATGCAGCGTTGATTCCTTTTGGATATTATAATCG 45170 ||||| || ||||| | | || | || || || || ||||| ||||| || || ||| Sbjct 612373 ATTCCACCACGGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCG 612432 Query 45171 CTGACGGTTTTAGAATCGTCCAATTGTTTTCCTGCGTATATCAATCGTTGCTGGTCCGGC 45230 || || | || || | ||| || || ||| | |||||||| |||||||| || Sbjct 612433 GAGAGAGTGCGACCGTCCTCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGA 612492 Query 45231 GGAATGCCTTCTTTATCTTGAATTTTTTGTTTGATCGCT-TCTACGGTGTCGGAAGACTC 45289 ||||| ||||| || || || || || || | || | || | |||||||||||||| Sbjct 612493 GGAATACCTTCCTTGTCCTGGATCTTCGACTTAA-CGTTGTCGATAGTGTCGGAAGACTC 612551 Query 45290 GACTTCGAGAGTAACCGTTTTGCCGGTTAGAGTTTTTACAAAAATTTGCATC 45341 ||| || ||||| | || |||||||| || || || || ||||| |||||| Sbjct 612552 GACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAAATCTGCATC 612603 Score = 91.5 bits (100), Expect = 1e-13 Identities = 144/204 (71%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || ||||| || || || ||||| ||| | ||| ||| ||||| || Sbjct 611865 TGAAGGGTGGATTCTTTCTGAATGTTATAGTCGGACAAAGTTCGTCCATCTTCCAACTGC 611924 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 ||||| ||| | || | ||||||||||| || || || || || || |||||||| || Sbjct 611925 TTTCCAGCGAAGATGAGACGTTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTC 611984 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 |||| || | || | || |||||||| ||||| |||||||||| ||| || || || Sbjct 611985 GACTTGA-CGTTGTCGATAGTATCGGAAGATTCGACCTCGAGAGTAATCGTCTTACCCGT 612043 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 | || || || || || ||||| Sbjct 612044 CAAGGTCTTGACGAAGATCTGCAT 612067 Score = 86.0 bits (94), Expect = 6e-12 Identities = 143/204 (70%), Gaps = 2/204 (1%) Strand=Plus/Plus Query 45138 TGCAGCGTTGATTCCTTTTGGATATTATAATCGCTGACGGTTTTAGAATCGTCCAATTGT 45197 || || || || ||||| ||||| || || ||||| | ||| ||| ||||| || Sbjct 611637 TGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCCAACTGC 611696 Query 45198 TTTCCTGCGTATATCAATCGTTGCTGGTCCGGCGGAATGCCTTCTTTATCTTGAATTTTT 45257 || || ||| | || | ||||||||||| ||||| || || || || || || || || Sbjct 611697 TTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTG 611756 Query 45258 TGTTTGATCGCT-TCTACGGTGTCGGAAGACTCGACTTCGAGAGTAACCGTTTTGCCGGT 45316 || | || | || | ||| || ||||| || || ||||| || | || || ||||| Sbjct 611757 CTCTTCA-CGTTGTCAATGGTATCCGAAGATTCCACCTCGAGTGTGATGGTCTTTCCGGT 611815 Query 45317 TAGAGTTTTTACAAAAATTTGCAT 45340 || || || ||||| |||||||| Sbjct 611816 GAGGGTCTTGACAAAGATTTGCAT 611839 >seq11 Length=1431289 Score = 86.0 bits (94), Expect = 6e-12 Identities = 199/298 (67%), Gaps = 4/298 (1%) Strand=Plus/Plus Query 123975 GAAGCAAAGTTGCTTAATACGCAAATAGCCGAAACAATTTATTACGGCGCTTTGGAGGCG 124034 || || ||||| ||||| | ||||| ||| || || || ||| ||| ||| |||| Sbjct 452553 GAGGCTAAGTTACTTAACAAACAAATCTTCGAGACCATCTACCACGCCGCCTTGACGGCG 452612 Query 124035 AGCTGCGAACTTGCGAAAATTCACGGCGCGTACGAAAGTTACGCGGGCAGCCCGGCGAGC 124094 | || || || || | ||| | |||| || |||| |||| ||||| | Sbjct 452613 TCCATGGAGCTCGCTAAGGAACTCGGTCCCTACGCCAGCTACGAGGGCTCCCCGGTCTCC 452672 Query 124095 CGAGGTATTTTGCAGTACGACATGTGGAATGCTACACCGACAAATTTGTGGGACTGGAGC 124154 | ||||| | || |||||||||||| ||| | || || || | ||||||||| Sbjct 452673 CAGGGTATCCTTCAATACGACATGTGGGATGTCAAGCCCACCGATCTCTGGGACTGGGAT 452732 Query 124155 GTTTTAAAACAACGCATATC--GACGCACGGTTTGCGTAACTCGCTGTTGGTGGCGTACA 124212 | |||| || ||| ||| | ||||||| | |||||| ||||||| || || Sbjct 452733 AGTCTAAAGCA--GCAGATCAAGCAGCACGGTGTCCGTAACAGTTTGTTGGTCGCCCCCA 452790 Query 124213 TGCCGACGGCAACCACTGCTCAAATTTTAGGAAACAACGAATCCTTCGAGCCGTTCAC 124270 |||| || || | |||| | ||||| || || ||||| || | ||| ||||| | ||| Sbjct 452791 TGCCCACAGCCAGCACTTCGCAAATCTTGGGTAACAATGAGTGCTTTGAGCCTTACAC 452848 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 452003103949320