Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_013756.1 Length=368454 Score E Sequences producing significant alignments: (Bits) Value seq15 141 2e-28 seq6 134 3e-26 seq3 114 3e-20 >seq15 Length=310649 Score = 141 bits (156), Expect = 2e-28 Identities = 162/218 (74%), Gaps = 0/218 (0%) Strand=Plus/Minus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||| ||||| || || |||||||| |||| ||||||||||| | ||| Sbjct 111220 CGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTA 111161 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | || || || |||||||| ||||||||||| |||||||||||||| ||| ||||||| Sbjct 111160 CGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCT 111101 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||||||||| || || |||| ||| || | | || || || | Sbjct 111100 TCCTTGTCCTGAATCTTGGATTTGACATTATCGATGGTATCGCTAGACTCCACCTCGAGG 111041 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCACAAAAATTTG 199626 ||||| ||||| ||||| || || || || ||||| || Sbjct 111040 GTGATAGTCTTGCCCGTAAGGGTCTTTACGAAAATCTG 111003 >seq6 Length=3640113 Score = 134 bits (148), Expect = 3e-26 Identities = 155/209 (74%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 || || | ||| |||||||||||||| |||| ||||||||| |||||| | ||||| Sbjct 611628 AGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCC 611687 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| |||||| ||||||||||| ||||| |||||||| || || || || ||| Sbjct 611688 TCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGGGATACCCTCCTTGTCC 611747 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||||||| || | ||| || | | ||| || || | ||||| ||| Sbjct 611748 TGGATCTTGCTCTTCACGTTGTCAATGGTATCCGAAGATTCCACCTCGAGTGTGATGGTC 611807 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || ||||| || || ||||| ||||| Sbjct 611808 TTTCCGGTGAGGGTCTTGACAAAGATTTG 611836 Score = 116 bits (128), Expect = 9e-21 Identities = 151/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | ||| || || || || || || | ||| ||||| | |||||| | ||||||| Sbjct 611856 AGGACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAGTCGGACAAAGTTCGTCCATCT 611915 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 |||| ||||||||| |||||||||||||| |||||||| || || || || || Sbjct 611916 TCCAACTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGTGGGATACCCTCCTTGTCT 611975 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 |||||||| ||| ||| |||| || || | | ||| || || | || |||||| Sbjct 611976 TGAATCTTCGACTTGACGTTGTCGATAGTATCGGAAGATTCGACCTCGAGAGTAATCGTC 612035 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 |||||||| | || || || || || || Sbjct 612036 TTACCCGTCAAGGTCTTGACGAAGATCTG 612064 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199409 CGAAGTCTCAGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTC 199468 ||||| | ||||||||||||||||| |||||||| || | ||||||||| | | || Sbjct 612075 CGAAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTA 612134 Query 199469 CTTCCATCTTCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCT 199528 | ||||| || |||||||| || || ||||| | ||||||||||| ||| || || Sbjct 612135 CGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATGCCC 612194 Query 199529 TCTCGCTCCTGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAAC 199588 || ||||| ||||| ||| ||| || | |||||| | | || || || | Sbjct 612195 TCCTTATCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGG 612254 Query 199589 GTGATCGTCTTACCCGTGAGAGTTTTCAC 199617 ||||| ||||| || || || || || || Sbjct 612255 GTGATGGTCTTGCCGGTAAGGGTCTTGAC 612283 Score = 107 bits (118), Expect = 5e-18 Identities = 149/209 (71%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 199418 AGGACAAGGTGGAGAGTCGACTCCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCT 199477 ||||| | |||||| || |||||||| |||| ||||||||| | | ||| | || || Sbjct 612391 AGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCC 612450 Query 199478 TCCAGCTGCTTTCCGGCGAAGATGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCC 199537 || || ||||| || ||||| || | ||||||||||| ||| ||| ||||| ||| Sbjct 612451 TCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCC 612510 Query 199538 TGAATCTTTTGCTTCACGGATTCGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTC 199597 || ||||| ||| ||| |||| ||||| | | || || || | ||||| ||| Sbjct 612511 TGGATCTTCGACTTAACGTTGTCGATAGTGTCGGAAGACTCGACCTCAAGAGTGATGGTC 612570 Query 199598 TTACCCGTGAGAGTTTTCACAAAAATTTG 199626 || || || || || || || ||||| || Sbjct 612571 TTGCCGGTAAGGGTCTTAACGAAAATCTG 612599 Score = 93.3 bits (102), Expect = 1e-13 Identities = 71/84 (85%), Gaps = 0/84 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 |||||||||||||| ||||||||||| ||||| | |||||| ||| |||||| ||||| Sbjct 611713 CTTATCTTCGCCGGTAAGCAGTTGGAGGATGGCCGAACTTTGAGCGACTACAACATCCAG 611654 Query 200995 AAAGAGTCTACTCTTCACCTTGTT 201018 || ||||| ||||||||| | ||| Sbjct 611653 AAGGAGTCGACTCTTCACTTGGTT 611630 Score = 87.8 bits (96), Expect = 4e-12 Identities = 66/78 (85%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 200935 CTTATCTTCGCCGGAAAGCAGTTGGAAGATGGAAGGACTTTGGCCGATTACAACGTCCAG 200994 || |||||||| ||||||||||||||||||||| | |||||| |||| || ||| | ||| Sbjct 611941 CTCATCTTCGCTGGAAAGCAGTTGGAAGATGGACGAACTTTGTCCGACTATAACATTCAG 611882 Query 200995 AAAGAGTCTACTCTTCAC 201012 ||||| || || |||||| Sbjct 611881 AAAGAATCCACCCTTCAC 611864 >seq3 Length=5105224 Score = 114 bits (126), Expect = 3e-20 Identities = 134/181 (74%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 199440 CCTTTTGGACGTTGTAGTCAGCCAAAGTCCTTCCATCTTCCAGCTGCTTTCCGGCGAAGA 199499 |||| |||| ||||||||||| | |||| ||||| || ||||||||||| ||||||| Sbjct 833604 CCTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGA 833545 Query 199500 TGAGACGCTGCTGGTCCGGAAAAATTCCTTCTCGCTCCTGAATCTTTTGCTTCACGGATT 199559 | |||||||||||||| || ||||||||| ||||||||||| ||| || | Sbjct 833544 TCAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGT 833485 Query 199560 CGACGGTGTCTGTTGTTTCTACATCCAACGTGATCGTCTTACCCGTGAGAGTTTTCACAA 199619 | | |||||| | | || || || | ||||| ||||| ||||| || || || || | Sbjct 833484 CAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGA 833425 Query 199620 A 199620 | Sbjct 833424 A 833424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1178921343216139