Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_013772.1 Length=176677 Score E Sequences producing significant alignments: (Bits) Value seq6 132 5e-26 seq15 125 8e-24 seq3 111 2e-19 >seq6 Length=3640113 Score = 132 bits (146), Expect = 5e-26 Identities = 149/197 (76%), Gaps = 2/197 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||||| |||||||| |||| ||||| ||||| || ||||| Sbjct 612411 CTCCTTCTGGATGTTGTAGTCGGAGAGAGTGCGACCGTCCTCGAGTTGCTTACCAGCGAA 612470 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||| | || | | ||||||||| ||||||| ||| | ||| Sbjct 612471 AATCAATCGCTGCTGGTCAGGAGGAATACCTTCCTTGTCCTGGATCTTCGACTT-AACGT 612529 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| ||||| || || || |||| Sbjct 612530 TGTCGATAGTGTCGGAAGACTCGACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAA 612589 Query 46581 CAAAGATTTGCATTTTG 46597 | || || ||||| ||| Sbjct 612590 CGAAAATCTGCATCTTG 612606 Score = 107 bits (118), Expect = 2e-18 Identities = 141/193 (73%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| ||||||||| | ||| || | || || | |||||| |||||||| Sbjct 611648 CTCCTTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAA 611707 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 || | || |||||||| | ||| | | |||||||||| |||||| |||| | ||| Sbjct 611708 GATAAGACGTTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCA-CGT 611766 Query 46522 CGCCACCG-TGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | || | | || |||||||| || | |||||||| || || || || || || | Sbjct 611767 TGTCAATGGTATCCGAAGATTCCACCTCGAGTGTGATGGTCTTTCCGGTGAGGGTCTTGA 611826 Query 46581 CAAAGATTTGCAT 46593 ||||||||||||| Sbjct 611827 CAAAGATTTGCAT 611839 Score = 107 bits (118), Expect = 2e-18 Identities = 134/181 (74%), Gaps = 2/181 (1%) Strand=Plus/Plus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| || || |||||||| || || || || | || ||||||||||| || || || Sbjct 612104 CTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCGAGCTGCTTACCAGCAAA 612163 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 ||||| ||||||||||||| || | || |||||| ||| ||||||| ||||| ||| Sbjct 612164 GATCAATCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTCGACTTGA-CGT 612222 Query 46522 CG-CCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAA 46580 | | | |||||| || || || || | |||||||| ||||| || || || || | Sbjct 612223 TGTCAATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTGA 612282 Query 46581 C 46581 | Sbjct 612283 C 612283 >seq15 Length=310649 Score = 125 bits (138), Expect = 8e-24 Identities = 143/192 (74%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 46402 CTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCGGCGAA 46461 |||||| ||||| |||||||| || ||||| || |||| |||||||||||||||||||| Sbjct 111191 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 111132 Query 46462 TATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTGAGCGT 46521 |||| ||||||||||||| || | | ||||||||| ||||| |||| | Sbjct 111131 GATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGAATCTTGGATTTGACATT 111072 Query 46522 CGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTTTTAAC 46581 | | || ||||| || ||||| || | ||||| || |||||||| || || || || Sbjct 111071 ATCGATGGTATCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTAAGGGTCTTTAC 111012 Query 46582 AAAGATTTGCAT 46593 || || ||||| Sbjct 111011 GAAAATCTGCAT 111000 >seq3 Length=5105224 Score = 111 bits (122), Expect = 2e-19 Identities = 138/189 (73%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 46397 GTACTCTCCTTTTGGATATTGTAGTCGGATAGAGTGCGCTCGTCGTCGAGCTGCTTGCCG 46456 |||| | |||| ||||| |||||||| || || || || | || ||||||||||| || Sbjct 833611 GTACGCACCTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTTCCA 833552 Query 46457 GCGAATATCAAGCGCTGCTGGTCGGCCGGCACGCTCTCCTTGTCCATGATCTTCTTCTTG 46516 ||||| |||| ||||||||||| | || | | ||||||||| ||||| |||| Sbjct 833551 GCGAAGATCAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTG 833492 Query 46517 AGCGTCGCCACCGTGTCGCTCGATTCCACATCCACCGTGATGGTTTTGCCCGTCAGCGTT 46576 | | | | |||||| || ||||| || | |||||||| ||||||||||| || Sbjct 833491 ACATTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTC 833432 Query 46577 TTAACAAAG 46585 ||||| ||| Sbjct 833431 TTAACGAAG 833423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 565238279886840