Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_013953.1 Length=156344 Score E Sequences producing significant alignments: (Bits) Value seq11 190 2e-43 seq6 114 1e-20 seq15 111 2e-19 seq3 102 8e-17 >seq11 Length=1431289 Score = 190 bits (210), Expect = 2e-43 Identities = 355/515 (69%), Gaps = 10/515 (2%) Strand=Plus/Plus Query 132591 CATCACGCCAAATTTTTGATATTCGCCCACCTTTTTCTCaaaaaaaTTAGTTTTTCCCTC 132650 ||| ||||| || || || ||||| || ||||| || || || || || || | Sbjct 758259 CATGACGCCGGCCTTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCC 758318 Query 132651 CAAGGAAATGAGCGTCATAAAATCCAAGGGGTTGGCTGTGTTGTAGTGCTT---GGTGCC 132707 | || ||| | |||||| || || |||||||| | |||| ||| | |||| Sbjct 758319 GAGAGAGATGTTCTCCATAAAGTCGAACGGGTTGGCGGACCGGTAGACCTTCTCGTTGCC 758378 Query 132708 GATCAGGTCGACGAGCAGCCTGTCGGCCACGAACTCGATGTATTGCGACATG-GTTTCGC 132766 || || ||||||| || | |||||| |||||||||||||| ||| |||| | |||| Sbjct 758379 GA---GGGCGACGAGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTCG- 758434 Query 132767 AATTAAGTCCCAGCAGA-CGCACCGGCAGCGCTTCGGTGAGAAAGCGTTGCTCGATGGCG 132825 | || | || || || |||| ||||| || ||||| || || |||||||| | Sbjct 758435 AGTTCATGCCGAGGAGGGCGCAA-GGCAGGGCCTCGGTCAGGAACTCCTGCTCGATCTTG 758493 Query 132826 ACCGCGTCGGTGACGATTTCCCTAACGCGCGCCGCGCTCGGCCGTTGCACCAAATGCTTG 132885 || ||||| ||| ||| ||| || | | ||| || || | | || | Sbjct 758494 ACGGCGTCCATGATGATCTCCTGAATCATCTGCTTGCTGGGGCGGTTGTTGAGGTGGGAG 758553 Query 132886 AACATCAAGCAAGCAAAGTCGCAATGCAAGCCCTCGTCCCTGGAAATGAGTTCGTTGCTG 132945 |||| || ||| || |||||| || | |||||||| | ||| ||||| |||||| | Sbjct 758554 AACAGCAGGCAGGCGAAGTCGGTGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAG 758613 Query 132946 AAAGTCAAGCCGGGCATGAGGCCGCGTTTTTTGAGCCAAAATATGGCGGCGAAACTGCCC 133005 || ||||||||||||||||| ||||| || |||||||| || |||| |||||| || Sbjct 758614 AAGGTCAAGCCGGGCATGAGACCGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCG 758673 Query 133006 GAAAAGAAGACGCCCTCGACGGCCGCGAAAGCCACCAGGCGCTCGCCGAACGTGGCTTCT 133065 ||||||| ||||||||||| ||||| || | || |||| |||| || | | Sbjct 758674 CTGAAGAAGATACCCTCGACGGCGGCGAAGGCGATCAAACGCTGAGCGAAAGTCGACTGC 758733 Query 133066 TTGCTGGCGATCCAGCGCAGCGCCCATTCGGCCTT 133100 ||| ||||||||| || || ||||| |||||||| Sbjct 758734 TTGTCGGCGATCCATCGGAGAGCCCAGTCGGCCTT 758768 Score = 127 bits (140), Expect = 2e-24 Identities = 194/276 (70%), Gaps = 3/276 (1%) Strand=Plus/Plus Query 133167 GTAGGTGTCGATGAGGGTCGAATACATTTCCGAGTGTACGTTCTCCATGGCGATTTGAAA 133226 ||||||||| ||||| || || | || ||||| | ||||||||| ||| || || Sbjct 758903 GTAGGTGTCAATGAGAAGAGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAA 758962 Query 133227 GCCGTAAAAGCACCGCGCCTCGACCACCTGCACTTCTTGAGCGAAACGCTCGACCAGATT 133286 ||||| ||||| || || ||| | ||| || ||| |||||||||||| || || Sbjct 758963 ACCGTAGAAGCATCGAGCTTCGGGGATCTGAACCTCTCCGCTGAAACGCTCGACAAGGTT 759022 Query 133287 TTCGTTGACGATGCCGTCGCTGGCGGCGAAAAAGGCCAGCACGTGCTTGATGAAATGGCG 133346 ||||||||||| ||||| |||||||| ||||| || | ||| |||||| | Sbjct 759023 CTCGTTGACGATACCGTCCGAAGCGGCGAAGAAGGCAAGGATGTGAGAGATGAAGTACTT 759082 Query 133347 CTCGTTGTCGTTCA---AGCGCTCCCAGTCGCGCGTGTCCTTGGACAGGTCCACCTCCTC 133403 ||| | ||||| | | | ||| ||| | |||||||| || || | |||||| Sbjct 759083 CTCATCCTCGTTGATTCTGTTGTTCCAATCGTGGAGATCCTTGGAAAGATCGATCTCCTC 759142 Query 133404 GACGGTCCAAAACGACGCCTCGGCTTTTTTGTACAT 133439 | | ||||| || || |||||||| || |||||||| Sbjct 759143 GGCAGTCCAGAAAGAGGCCTCGGCCTTCTTGTACAT 759178 >seq6 Length=3640113 Score = 114 bits (126), Expect = 1e-20 Identities = 159/220 (72%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 38241 AAAATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 || ||||| || ||||| || || || || ||||| |||||||| | || |||||| | Sbjct 612605 AAGATGCAGATTTTCGTTAAGACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCT 612546 Query 38301 ACCGACAGCGTGCA-AACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGA 38359 |||||| | | |||| |||| || |||| ||||| || || ||||| | || Sbjct 612545 TCCGACACTATCGACAACG-TTAAGTCGAAGATCCAGGACAAGGAAGGTATTCCTCCTGA 612487 Query 38360 CCAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTA 38419 ||| ||||| | |||| ||| || || || || || |||| ||||| ||| |||||| Sbjct 612486 CCAGCAGCGATTGATTTTCGCTGGTAAGCAACTCGAGGACGGTCGCACTCTCTCCGACTA 612427 Query 38420 CAACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGT 38459 ||||||||| ||||| | || || || ||||| || ||| Sbjct 612426 CAACATCCAGAAGGAGTCTACCCTCCACTTGGTCCTCCGT 612387 Score = 100 bits (110), Expect = 3e-16 Identities = 165/232 (71%), Gaps = 6/232 (3%) Strand=Plus/Minus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 |||||||| || || || || ||||| || || |||||||| |||| || || | | Sbjct 611839 ATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACCATCACACTCGAGGTGGAATCTTCG 611780 Query 38304 GACAGCGTGCA-AACGCTTAAAGAAAAA-ATCCTCGACAAAGAGGGAATTCCCGCC-GAC 38360 || | | | | |||| | |||| || |||| ||||| ||||| || |||||| ||| Sbjct 611779 GATACCATTGACAACG--TGAAGAGCAAGATCCAGGACAAGGAGGGTAT-CCCGCCTGAC 611723 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || || || || || | ||| || || ||| |||| || | || || | | ||||||| Sbjct 611722 CAGCAACGTCTTATCTTCGCCGGTAAGCAGTTGGAGGATGGCCGAACTTTGAGCGACTAC 611663 Query 38421 AACATCCAAAAGGAAGCGACGCTGCATTTGGTGCTGCGTTTGAGAGGCGGCC 38472 |||||||| ||||| |||| || || ||||| || ||| | | || |||| Sbjct 611662 AACATCCAGAAGGAGTCGACTCTTCACTTGGTTCTTCGTCTCCGTGGTGGCC 611611 >seq15 Length=310649 Score = 111 bits (122), Expect = 2e-19 Identities = 139/191 (73%), Gaps = 0/191 (0%) Strand=Plus/Plus Query 38244 ATGCAAATATTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCCACC 38303 ||||| || |||||||| || || |||||||| || |||||| |||| || ||| | | | Sbjct 111000 ATGCAGATTTTCGTAAAGACCCTTACGGGCAAGACTATCACCCTCGAGGTGGAGTCTAGC 111059 Query 38304 GACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGACCAA 38363 || | | | | | | ||| || || | ||||| || |||||||| ||||||| Sbjct 111060 GATACCATCGATAATGTCAAATCCAAGATTCAGGACAAGGAAGGAATTCCTCCCGACCAG 111119 Query 38364 CAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTACAAC 38423 ||||| || || | ||| ||||| ||||| || |||| || || || ||||||||| Sbjct 111120 CAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTTTCTGACTACAAC 111179 Query 38424 ATCCAAAAGGA 38434 ||||| ||||| Sbjct 111180 ATCCAGAAGGA 111190 >seq3 Length=5105224 Score = 102 bits (112), Expect = 8e-17 Identities = 139/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 38243 AATGCAAATA--TTCGTAAAAACGCTCACGGGCAAAACCATCACCGTCGACGTCGAGGCC 38300 |||| |||| ||||| || || || |||||||| ||||||||| |||| || ||| | Sbjct 833412 AATGTGAATAGCTTCGTTAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGTCT 833471 Query 38301 ACCGACAGCGTGCAAACGCTTAAAGAAAAAATCCTCGACAAAGAGGGAATTCCCGCCGAC 38360 |||||| | | | | | || || || | ||||| || ||||||||| | ||| Sbjct 833472 TCCGACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGAATTCCCCCTGAC 833531 Query 38361 CAACAGCGGCTCATTTACGCGGGCAAACAGCTGGACGACGAGCGCACCCTCAACGACTAC 38420 || ||||| || || | ||| || || ||||| || || | || |||||| |||||| Sbjct 833532 CAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGGACCCTCTCTGACTAC 833591 Query 38421 AACATCCAAAAGG 38433 |||||||| |||| Sbjct 833592 AACATCCAGAAGG 833604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 500172693713280