Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_014765.1 Length=198519 Score E Sequences producing significant alignments: (Bits) Value seq12 257 2e-63 seq6 132 6e-26 seq5 122 1e-22 >seq12 Length=872789 Score = 257 bits (284), Expect = 2e-63 Identities = 435/629 (69%), Gaps = 6/629 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 ||||| || |||||||||||||| || || || ||||| | ||||| || ||||||||| Sbjct 632318 TCGAAGTCCTCACCACCCAAGTGAGTGTCACCGGCGGTGGACTTGACCTCGAAGATACCT 632259 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 | || ||| | | | |||||||| || ||||||||||||| ||| || ||||| ||| Sbjct 632258 TCCTCGATGGTAAGGAGGGAAACATCGAAAGTACCACCACCCAAGTCGAAGATGAGGACG 632199 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 || || | || | ||||| ||||||||||| ||||| || || || || || || Sbjct 632198 TTGCGCTCACCCTCGGTCTTCTTGTCGAGACCGTAGGCGATGGCGGCAGCGGTAGGCTCG 632139 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || || ||||| || ||| || || || || | || || || || || ||||| Sbjct 632138 TTGATGATACGGAGGACGTTGAGACCGGCGATGAGACCGGCGTCCTTGGTAGCCTGTCGC 632079 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || | ||||| |||||||| ||||| || | ||| |||| ||||| | ||| || Sbjct 632078 TGAGCGTCGTTGAAGTAGGCGGGGACGGTGATGACGGCGTTGGTGACGGTGCCACCTAGG 632019 Query 7757 TACGATTCCGCGATATCTTTCATTTTGGTAAGAACCATCGATGAAATCTCTTCAGCCGCA 7816 || || || ||| | || ||| ||||| || ||||| || || || ||||| | | Sbjct 632018 TAAGACTCGGCGGTCTCACGCATCTTGGTGAGGACCATGGAGGAGATTTCTTCCGGGGTG 631959 Query 7817 AACTGTTTCGTTTCACCGTTAAAATCAACTTCAATCATGGGTTTATCCGCAGCACCGGGG 7876 ||||| || | || || || | || || || || | ||| || | ||| | | Sbjct 631958 AACTGCTTGTTCTCGCCCTTGTACTCGACCTCGATGACGGGCTT---GGAAGCCTTGTCG 631902 Query 7877 ATAACCTTATACGACCAATCTTTCATATCGTCTTGGACCTGTTGGTCCGAAAACTTTCTT 7936 | || ||| | | | | ||||| ||| | || |||| |||| | ||||| | Sbjct 631901 ACAATCTTGAAGGGGAAGTGCTTCATGTCGGCCTGAACCTCAGGGTCGGCGAACTTGCGA 631842 Query 7937 CCGATAAGACGCTTTGCATCAAAAACTGTGTTTTTGGGGTTCATGGCTGTTTGGTTCTTC 7996 || || | |||||| || || || || ||||| | ||||||||||| |||||||| Sbjct 631841 CCAATCAAACGCTTGGCGTCGAATACGGTGTTCTGAGGGTTCATGGCGACCTGGTTCTTG 631782 Query 7997 GCCGCGTCCCCGATAAGACGTTCATTATTTTCCGTAAACGCGACGTACGATGGGGTCGTT 8056 || || || ||||| | || || || ||||| || |||||| |||| || || ||| Sbjct 631781 GCGGCATCTCCGATCAATCGCTCGGTA---TCCGTGAAAGCGACGAACGAAGGTGTGGTT 631725 Query 8057 CGATTCCCTTGGTCGTTCGCAATAATTTC 8085 || || || ||||| || ||||| ||||| Sbjct 631724 CGGTTACCCTGGTCATTGGCAATGATTTC 631696 >seq6 Length=3640113 Score = 132 bits (146), Expect = 6e-26 Identities = 226/327 (69%), Gaps = 3/327 (1%) Strand=Plus/Minus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| |||||||| | || || || || ||||| || ||| || |||| ||| Sbjct 2396688 TCGAAATCCTCACCACCGAGATGGGTGTCACCGGCGGTAGCCAAGACCTCGAAGACACCC 2396629 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || ||| | | |||||||| || ||||||||||| || || ||| || | | Sbjct 2396628 TGGTCGATGGAAAGAAGAGAAACATCGAAAGTACCACCACCAAGATCGTAAACGATGATG 2396569 Query 7577 TTCGTATCGTCGTCTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGTTCA 7636 | || |||| | |||| || |||||||| |||||||| || || || || || Sbjct 2396568 TGACGCTCACCGTC---GGTCTTGTCAAGACCGTAGGCGATAGCGGCAGCGGTGGGCTCG 2396512 Query 7637 TTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGTCGT 7696 || | ||||| ||| ||| || || ||||| | ||||| || || || |||| Sbjct 2396511 TTGACGATACGGAGAACGTTGAGACCGGCAATGACACCGGCATCCTTGGTGGCCTGTCTC 2396452 Query 7697 TGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCGAGA 7756 || ||||| |||||||| ||||| || ||||| |||| || || |||||||| | Sbjct 2396451 TGGTTGTCGTTGAAGTAGGCAGGGACGGTAACGACGGCGTGGGTAACCTTCTTACCCAAG 2396392 Query 7757 TACGATTCCGCGATATCTTTCATTTTG 7783 ||||| || || | || ||||| ||| Sbjct 2396391 TACGACTCGGCAACCTCCTTCATCTTG 2396365 >seq5 Length=3971467 Score = 122 bits (134), Expect = 1e-22 Identities = 223/326 (68%), Gaps = 3/326 (1%) Strand=Plus/Plus Query 7457 TCGAAATCTTCACCACCCAAGTGTGTATCCCCCGCGGTCGCTTTGACTTCAAAGATACCT 7516 |||||||| | |||||| | || || || || ||||| || ||||| |||| ||| Sbjct 2386001 TCGAAATCCTGACCACCAAGATGGGTGTCACCGGCGGTAGCCTTGACGGTGAAGACACCA 2386060 Query 7517 CCTTCAATGTTTAACAACGAAACATCAAACGTACCACCACCCAGGTCAAAAATGAGTACG 7576 || | ||||| | | |||||||| || ||||||||||| || || | || || || Sbjct 2386061 CCCTGGATGTTCAGAAGAGAAACATCGAAAGTACCACCACCAAGATCGTAGATAAGGACA 2386120 Query 7577 TTCGTATCGTCGT---CTTTGTTCTTATCGAGACCGTACGCGATAGCCGCCGCCGTTGGT 7633 || || | || ||||| | | |||||||| ||||| || ||||| || || Sbjct 2386121 TTACGCTCCTTGTTAGACTTGTTGGAACCAAGACCGTAGGCGATGGCAGCCGCGGTAGGC 2386180 Query 7634 TCATTAATAATACGAAGACAGTTCAGGCCAGCAATAGTTGCCGCATCTTTCGTCGCTTGT 7693 || || |||||||| ||| ||| || |||||||| | | || || || || || || Sbjct 2386181 TCGTTGATAATACGGAGAACGTTGAGTCCAGCAATGGCACCGGCGTCCTTGGTAGCCTGA 2386240 Query 7694 CGTTGCGAATCGTTAAAGTAGGCCGGGACCGTTACGACCGCGTCCGTGACTTTCTTACCG 7753 || || ||||| |||||||| || || || | ||| || | | || ||||| ||| Sbjct 2386241 CGCTGGTTGTCGTTGAAGTAGGCAGGCACGGTGATGACAGCCTTCTCAACCTTCTTGCCG 2386300 Query 7754 AGATACGATTCCGCGATATCTTTCAT 7779 || | || ||||| || ||||| Sbjct 2386301 AGCTTGACCTCGGCGATCTCCTTCAT 2386326 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 635132665034280