Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_014766.1 Length=194022 Score E Sequences producing significant alignments: (Bits) Value seq11 282 5e-71 seq1 102 1e-16 >seq11 Length=1431289 Score = 282 bits (312), Expect = 5e-71 Identities = 1120/1742 (64%), Gaps = 39/1742 (2%) Strand=Plus/Plus Query 111612 CCACAGTACATGTTCATGCGGGTCGCGATCGGTATCCATGGGGAAGATATTGATTCTGTT 111671 || ||| ||||| ||||||| || || |||||||| || || || |||| || Sbjct 451482 CCGCAGCACATGATCATGCGTGTTGCCGTCGGTATCTGGGGTGACGACGTTGAAAAGGTC 451541 Query 111672 TTGGAGACATACGACAAGATGTCCCGTGG-TATGTTCATCCACGCAACACCAACCCTCTT 111730 | ||||||||| | |||||| | ||| |||| |||||| | || ||||| || Sbjct 451542 ATTGAGACATACAATCTCATGTCCAGCAAATAT-TTCACCCACGCCTCCCCCACCCTTTT 451600 Query 111731 CAACGCTGGTACACCAAGACCCCAAATGTCCAGTTGTTTCCTTATTGCAAACAAGGAGGA 111790 |||||| ||||| || | || | ||| |||||||||| | | | ||||| || Sbjct 451601 CAACGCCGGTACCCCCCAGGCTCAGCTTTCCTCTTGTTTCCTTGTAGACATGAAGGATGA 451660 Query 111791 TTCAATCAATGGCATTTACGGCACTCTCACTGAATGTGCCCAAATCTCAAAGTGGGCTGG 111850 || | || || || | ||| |||| ||||| ||||| ||| ||| || Sbjct 451661 CAGCATTGAGGGTATCTATGACACCCTCAAGACTTGTGCTATGATCTCCAAGATGGCGGG 451720 Query 111851 TGGTATCGGGATGCACATCCATGATGTCAGAGCCAACAAGTCTCGTATTAGAGGTACAAA 111910 |||||| || | || | || | || || | | | ||| ||| ||||| || Sbjct 451721 TGGTATTGGTCTCAACGTTCACCGTATCCGATCTACCGGATCTTACATTGCCGGTACCAA 451780 Query 111911 TGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATGT 111970 ||| || | |||||| | || |||||||| || || ||| ||| || | || || Sbjct 451781 CGGTACTTCTAACGGTATTGTACCTATGCTTCGTGTCTTCAACAACACGGCCAGATACGT 451840 Query 111971 AAACCAAGCTGGGCGTCGCAAGGGATCTA------TCGCAGTCTATCTTGAGCCATGGCA 112024 |||| | ||| |||| || || | || |||| || ||||| ||||| Sbjct 451841 TGACCAGGGTGGCAA---CAAGAGACCTGGTGCCTTTGCCATCTACCTCGAGCCGTGGCA 451897 Query 112025 CGCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGATGAGGAGG--CGCGG 112082 | ||||| | | |||||| | || | ||| ||||| || | ||||| | |||| Sbjct 451898 CTCGGATGTTTTCGAGTTCTTGGATCTCCGTAAGAACCACGGAAAGGAGGAAGTTCGCGC 451957 Query 112083 TGCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAG 112142 | |||||||| ||| |||||||||||||| ||||| ||||||||| | |||||| || Sbjct 451958 T--CGCGATCTTTTCCTTGCTCTCTGGATTCCCGATCTTTTCATGAAGCGTGTTGAGAAG 452015 Query 112143 AGTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCCGGTCTCTCCGATGCCGTGGGT 112202 | || | ||| | ||| | ||||| || || || || ||| | || | | || Sbjct 452016 AACGGTGAATGGACGCTCATGTGTCCCAACGAGTGCCCTGGCCTCGCTGACGTCTACGGC 452075 Query 112203 GAGGAGTTTGAAGCCCTCTACACAAAGTACGAGGAAGAAAGTCGGGCGACTGC-GACGGT 112261 || ||||| || || || ||| |||||||| | || | || | | | | || ||| Sbjct 452076 GATGAGTTCGAGGCTCTGTACGAGAAGTACGAAGCCGAGGGCCGTG-GCCGCCAGAAGGT 452134 Query 112262 GCCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCAT 112320 | || | || | ||| | || || ||| || |||| || |||||||||| |||| Sbjct 452135 -CAAGGCCCAGAAACTTTGGTATGCCATCCTCGAGGCTCAGACTGAGACTGGTAACCCAT 452193 Query 112321 ATATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCA 112380 ||||||||||| || ||| |||| ||||| || || ||||| |||| || Sbjct 452194 TCATGCTTTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACTATTC 452253 Query 112381 AGAGTTCCAACCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGT 112440 ||||| |||||||| || || || | || | | | |||||| ||||||| Sbjct 452254 GCAGTTCTAACCTCTGCACCGAGATTATTGAGTACTCGGCTCCTGATGAGGTCGCTGTGT 452313 Query 112441 GTAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGAT 112499 | ||||| || || | || | || ||||||||| | || | | | | ||| Sbjct 452314 GCAACCTGGCTTCCCTTGCCTTACCTTCGTATGTGGACTACAACGCGGGCGCC-TACGAT 452372 Query 112500 TATGAAAAACTCCACGAAGTTACGAAAACTGTCACAAAAAACCTAAACAGAGTTATTGAT 112559 | | || | ||||| ||| | ||| ||| || |||| | ||||| Sbjct 452373 TTCCAGAAGTTGCACGACGTTGTCCAGGTGGTCGTGCGAAATCTGAACAAGATCATTGAG 452432 Query 112560 AGAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATT 112616 || |||||||| |||| ||||| || || ||| | |||||||| || Sbjct 452433 GTCAACCACTACCCCGTACCTGAG---GCTCGCAACAGCAACATGCGCCACCGTCCCATC 452489 Query 112617 GGTCTCGGTGTCCAAGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCC 112676 || | |||||||||||||| || |||| ||| | | || || |||| || || Sbjct 452490 GGATTGGGTGTCCAAGGTCTTGCCGATGCTTTCCTAGCTCTCCGATACCCATTCGAATCG 452549 Query 112677 GACGAAGCGAAGGAAATCAATGCGCGTATATTTGAGACAATGTATCACGCCGCTCTTGA- 112735 || || ||| | | || | || || ||||| || || |||||||| ||||| Sbjct 452550 CCTGAGGCTAAGTTACTTAACAAACAAATCTTCGAGACCATCTACCACGCCGC-CTTGAC 452608 Query 112736 GGCGAGTTCGGAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 112795 |||| |||| | || ||| ||||| || | | || ||||| || || | Sbjct 452609 GGCGTCCATGGAGCTCGCTAAGGAACTCGGTCCCTACGCCAGCTACGAGGGCTCCCCGGT 452668 Query 112796 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTG 112855 || || || | ||||||| || |||||||| | || ||| || || ||||| Sbjct 452669 CTCCCAGGGTATCCTTCAATACGACATGTGGGATGTCAAGCCCACCGATCTCTGGGACTG 452728 Query 112856 GGACGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTTTTGATGGCACC 112915 ||| ||| ||| | | |||||| || | ||| | ||||||||| | ||| | || || Sbjct 452729 GGATAGTCTAAAGCAGCAGATCAAGCAGCACGGTGTCCGTAACAGTTTGTTGGTCGCCCC 452788 Query 112916 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 112975 ||||| |||||| ||| | |||||||||||||| ||||| |||||||| || ||||| Sbjct 452789 CATGCCCACAGCCAGCACTTCGCAAATCTTGGGTAACAATGAGTGCTTTGAGCCTTACAC 452848 Query 112976 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCT 113035 | |||||||| | | | ||||||||||||||| | |||| ||| || Sbjct 452849 CTCCAACATCTACTCGCGTCGTGTCCTCGCGGGAGAGTTCCAGGTTGTTAACCCTTGGCT 452908 Query 113036 CGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAA 113095 | | ||||| || || ||||| ||||| | | |||||| | | ||| | Sbjct 452909 ACTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGACAACATGAAGAACCGCATTATTGC 452968 Query 113096 AGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAGATGAAATTAAGAAGTTGTACCG 113155 | |||||||| || || || || ||||| | ||| || ||| |||||| Sbjct 452969 CGAAGGTGGTTCGATCCAGAACATCCCCAGCATTCCTGCTGATATCAAGGCATTGTACAA 453028 Query 113156 CACAGTTTGGGAAATC---AAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCG 113212 || |||||||||||| || | | |||| | ||||| || || |||||| Sbjct 453029 GACGGTTTGGGAAATCTCTCAGCGTACCGTTGTC---CAGATGGCTGCCGACCGTGGTGC 453085 Query 113213 CTTCATTGATCAAAGTCAAAG--TATGAATCTATTCATGGAAAGTCCAACGATGTCCAAG 113270 ||||| |||| |||| || | | || | |||| | || || ||| |||| Sbjct 453086 GTTCATCGATC--AGTCCCAGTCTCTTAACATTCACATGAGAGAACCCACTATGGGCAAG 453143 Query 113271 CTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTC 113330 || | |||||| | |||||||| |||||||| ||||| ||||| || ||| Sbjct 453144 ATCACGAGCATGCACTTCACGGGTTGGAAGCTCGGTCTCAAGACGGGAATGTACTATCTC 453203 Query 113331 CG 113332 || Sbjct 453204 CG 453205 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 102204 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 102263 || ||||||||||||||| ||| ||||| | | || | |||||||||||||| ||| Sbjct 758693 GTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGT 758634 Query 102264 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 102320 |||||||| || | ||||||||||||||| ||||| || |||||||| |||||| Sbjct 758633 CTCATGCCCGGCTTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCAC 758577 >seq1 Length=7732581 Score = 102 bits (112), Expect = 1e-16 Identities = 162/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 16065 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGA 16122 ||||| || ||||| ||||||| |||||| || ||| | ||| || | || ||| | Sbjct 3348044 GCATCGATTTCATCGATGAAGATGATGCAAGGCGCATTCTTGCGCGC--CGTCGAAAAAA 3348101 Query 16123 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-A 16181 |||| || || | | || |||||||| ||||||||||| || || | | || | Sbjct 3348102 GATCACGGACTCTCGAAGCTCCCACACCGACAAACATCTCGACGAATTCCGAACCGCTTA 3348161 Query 16182 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 16241 || || | || || || ||| || || || ||||| ||| || || ||||||||| Sbjct 3348162 CACTGAAA-AACGGCACGCCAGACTCGCCGGCGGTGGCTTTGGCCAGTAGCGTCTTACCC 3348220 Query 16242 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 16289 || || || ||| ||||||| ||||||||||| |||||||| ||| Sbjct 3348221 GTTCCGGGAGGACCGGCGAGGATAGCACCTCGTGGGATCTTGGCACCA 3348268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 620742268092240