Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_014767.1 Length=184095 Score E Sequences producing significant alignments: (Bits) Value seq11 127 2e-24 seq1 91.5 2e-13 >seq11 Length=1431289 Score = 127 bits (140), Expect = 2e-24 Identities = 480/746 (64%), Gaps = 9/746 (1%) Strand=Plus/Minus Query 110287 GCAATAGACGCAAGATTGCACACAGAAGTCTCGTCTTTGTCGGTGTATTCCAAAATTTCC 110346 |||| || || || |||||||||| ||| || | | ||| || | ||| || Sbjct 452332 GCAAGGGAAGCCAGGTTGCACACAGCGACCTCATCAGGAGCCGAGTACTCAATAATCTCG 452273 Query 110347 GTACACAAGTTGGAACTCTTAATGACACCCAAGTTCTTCTGATTCGATTTGGAGTTGCAT 110406 || || | ||| ||||| ||| |||| ||||||||| || ||| |||||| Sbjct 452272 GTGCAGAGGTTAGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAG 452213 Query 110407 GCATCCTTATAGAGCATGTATGGGGTACCAGTTTCCGTCTGTGACTTGAGAATGGCCTTC 110466 |||||| || |||||| ||||| ||||||| || ||||| | || ||| ||||| | | Sbjct 452212 TGATCCTTGTAAAGCATGAATGGGTTACCAGTCTCAGTCTGAGCCTCGAGGATGGCATAC 452153 Query 110467 CATACATCGGCGGCGGGGACAGTTGCGTTAGCGA-GACCTTCCTCCTCGTACTTGGTGTA 110525 || | | ||| ||| || | || | | || || | |||||||| ||| Sbjct 452152 CAAAGTTTCTGGGCCTTGACC-TTCTGGCGGCCACGGCCCTCGGCTTCGTACTTCTCGTA 452094 Query 110526 CAAGTCCTCAAATTCCTGTCCGTACACATCAGAAAGACCCTTCGCCTTGTCGGGACAGAA 110585 || |||| || || | ||||| || |||| || || || || |||||| | Sbjct 452093 CAGAGCCTCGAACTCATCGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACAT 452034 Query 110586 GAGGGACCAATTTCCACCCTCCTCAACCCTCTTCATGAACAGGTCAGGAATCCACATCGC 110645 ||| | ||| | || || |||||| | ||||||||| || || |||||||| | || Sbjct 452033 GAGCGTCCATTCACCGTTCTTCTCAACACGCTTCATGAAAAGATCGGGAATCCAGAGAGC 451974 Query 110646 CGAGAAAAGGTCACGGCAACGAGCCTCTTCATCACCTTGGTTGAGGCGTAGCTCCAAAAA 110705 |||||| || || ||| | || || | || ||||| || || ||||| || Sbjct 451973 AAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTACGGAGATCCAAGAA 451914 Query 110706 GTCCATGATATCCGAGTGCCATGGTTCGAGATAGACAGCGATGGATCC----CTTACGAC 110761 || | | |||||||||||| || ||||| |||| || | || || || | Sbjct 451913 CTCGAAAACATCCGAGTGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGTCTCTTGTT 451854 Query 110762 GACCCGCCTGGTTAACATAGCGTGCTGTGGCATTGAAGACCCTGAGCATAGGAATAATTC 110821 | || |||||| ||| || | || ||| |||||||| | |||||||| | ||| | Sbjct 451853 G-CCACCCTGGTCAACGTATCTGGCCGTGTTGTTGAAGACACGAAGCATAGGTACAATAC 451795 Query 110822 CATCGGATTGACCATTTGTACCCCTAATTCTGGACTTATTGGCACGAATGTCGTGGATAT 110881 | | || ||| || ||||| ||| || | | || || ||| | | Sbjct 451794 CGTTAGAAGTACCGTTGGTACCGGCAATGTAAGATCCGGTAGATCGGATACGGTGAACGT 451735 Query 110882 GCATACCAATACCACCCGCCCACTTACTAATTTGTGCAC-ACTCTGTGAGTGTACCATAA 110940 | |||||||||||||||| ||| || |||| | ||| |||| || |||| Sbjct 451734 TGAGACCAATACCACCCGCCATCTTGGAGATCATAGCACAAGTCT-TGAGGGTGTCATAG 451676 Query 110941 ATACCATCAATCGAATCTGCCTTGTTGGCAATTAGAAAGCAAGAAGACATCTGAGGACGA 111000 ||||| ||||| || |||| || | | || || ||||| || | ||||| | Sbjct 451675 ATACCCTCAATGCTGTCATCCTTCATGTCTACAAGGAAACAAGAGGAAAGCTGAGCCTGG 451616 Query 111001 GGCGTTCCCGCATTGAAGAGTGTAGG 111026 || || || || ||||| || || || Sbjct 451615 GGGGTACCGGCGTTGAAAAGGGTGGG 451590 >seq1 Length=7732581 Score = 91.5 bits (100), Expect = 2e-13 Identities = 161/229 (70%), Gaps = 8/229 (3%) Strand=Plus/Plus Query 11683 GCGTCAATCTCATCGATGAATACGATACACGGTTGGTTGGCACGTGCCTGTTCGAAAA-- 11740 || || || ||||||||||| | ||| || || || || ||| ||||||| Sbjct 3348044 GCATCGATTTCATCGATGAAGATGATGCAAGGCGCATTCTTGCGCGCCG--TCGAAAAAA 3348101 Query 11741 GTTCACGTACACGCTTCGCTCCAACACCTACGAACATCTCAACGAAGTTTG--CGGCAGA 11798 | ||||| || | | ||||| ||||| || |||||||| ||||| | | | || | Sbjct 3348102 GATCACGGACTCTCGAAGCTCCCACACCGACAAACATCTCGACGAATTCCGAACCGCTTA 3348161 Query 11799 ACACTGAATGAAGGGAACATTAGACTCACCAGCGATGGCTCGAGCGAGGAGAGTCTTACC 11858 ||||||| || || || |||||| || ||| ||||| || || || |||||||| Sbjct 3348162 -CACTGAAA-AACGGCACGCCAGACTCGCCGGCGGTGGCTTTGGCCAGTAGCGTCTTACC 3348219 Query 11859 CGTACCAGGTGCACCAGCGAGAAGGGCGCCACGGGGGATCTTGGCACCA 11907 ||| || || | ||| ||||| | || || || ||||||||||||||| Sbjct 3348220 CGTTCCGGGAGGACCGGCGAGGATAGCACCTCGTGGGATCTTGGCACCA 3348268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 588975874842600