Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_015326.1 Length=346754 Score E Sequences producing significant alignments: (Bits) Value seq6 152 1e-31 seq15 138 3e-27 seq3 125 2e-23 seq11 93.3 9e-14 >seq6 Length=3640113 Score = 152 bits (168), Expect = 1e-31 Identities = 156/204 (76%), Gaps = 0/204 (0%) Strand=Plus/Plus Query 194937 GTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTG 194996 |||||| ||||| ||||| ||||| || || |||| | ||||| |||||||| | ||| Sbjct 611864 GTGAAGGGTGGATTCTTTCTGAATGTTATAGTCGGACAAAGTTCGTCCATCTTCCAACTG 611923 Query 194997 CTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTT 195056 ||| || |||||||| || ||||| ||||| || || || || || ||||||||||| || Sbjct 611924 CTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTT 611983 Query 195057 TTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGT 195116 ||||||||| || || || || ||| ||| || || || |||| |||||| || || Sbjct 611984 CGACTTGACGTTGTCGATAGTATCGGAAGATTCGACCTCGAGAGTAATCGTCTTACCCGT 612043 Query 195117 CAAAGTTTTTACGAACACTTGCAT 195140 ||| || || ||||| | ||||| Sbjct 612044 CAAGGTCTTGACGAAGATCTGCAT 612067 Score = 152 bits (168), Expect = 1e-31 Identities = 153/199 (77%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 |||||||| ||||||||||| || ||||| ||||| || | ||| || | ||||| ||| Sbjct 612087 ACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCG 612146 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 ||||||||||| || ||||| | ||| || ||||| ||||| ||||| || || || || Sbjct 612147 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGG 612206 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||||||| ||||||||||| ||| || || |||||||| | ||||| Sbjct 612207 ATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTG 612266 Query 195112 CCTGTCAAAGTTTTTACGA 195130 || || | || || |||| Sbjct 612267 CCGGTAAGGGTCTTGACGA 612285 Score = 145 bits (160), Expect = 2e-29 Identities = 158/210 (75%), Gaps = 0/210 (0%) Strand=Plus/Plus Query 194931 AACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTC 194990 ||| | ||||||||| ||||| || || || ||||| ||| | ||||| ||||| || Sbjct 611630 AACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTC 611689 Query 194991 GAGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTG 195050 | ||||||||| ||||||||||| ||||| ||||| || || || || || ||||| || Sbjct 611690 CAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGGGATACCCTCCTTGTCCTG 611749 Query 195051 AATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTT 195110 || || ||| ||||| |||||||| |||||| |||||| || || || | ||||| Sbjct 611750 GATCTTGCTCTTCACGTTGTCAATGGTATCCGAAGATTCCACCTCGAGTGTGATGGTCTT 611809 Query 195111 TCCTGTCAAAGTTTTTACGAACACTTGCAT 195140 ||| || | || || || || | |||||| Sbjct 611810 TCCGGTGAGGGTCTTGACAAAGATTTGCAT 611839 >seq15 Length=310649 Score = 138 bits (152), Expect = 3e-27 Identities = 156/209 (75%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 194932 ACAAGGTGAAGAGTGGACTCTTTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCG 194991 || |||||||| |||||||| || || || ||||| || | |||||| | || || ||| Sbjct 111208 ACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCG 111149 Query 194992 AGCTGCTTACCTGCGAAGATAAGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGA 195051 |||||||| || |||||||| || || || ||||| |||||||| ||||| ||||| ||| Sbjct 111148 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGA 111089 Query 195052 ATTTTTTGCTTGACGTTCTCAATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTT 195111 || || ||||| || || ||||| || | ||||| || ||||| | ||||| Sbjct 111088 ATCTTGGATTTGACATTATCGATGGTATCGCTAGACTCCACCTCGAGGGTGATAGTCTTG 111029 Query 195112 CCTGTCAAAGTTTTTACGAACACTTGCAT 195140 || || | || |||||||| | ||||| Sbjct 111028 CCCGTAAGGGTCTTTACGAAAATCTGCAT 111000 >seq3 Length=5105224 Score = 125 bits (138), Expect = 2e-23 Identities = 135/179 (75%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 194953 TTTTGAATATTGTAATCGGCAAGAGTTCTCCCATCTTCGAGCTGCTTACCTGCGAAGATA 195012 || || || ||||| || | || || | ||||| ||||||||||| || |||||||| Sbjct 833602 TTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 833543 Query 195013 AGTCGTTGTTGGTCTGGAGGAATGCCTTCTTTGTCTTGAATTTTTTGCTTGACGTTCTCA 195072 || || || ||||| || ||||| ||||| ||||| ||||| || |||||| || ||| Sbjct 833542 AGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 833483 Query 195073 ATGGTGTCCGAACTTTCCACTTCAAGGGTAACCGTCTTTCCTGTCAAAGTTTTTACGAA 195131 |||||||| ||| ||||| || ||||| | ||||| || |||| || || ||||| Sbjct 833482 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 833424 >seq11 Length=1431289 Score = 93.3 bits (102), Expect = 9e-14 Identities = 185/273 (68%), Gaps = 6/273 (2%) Strand=Plus/Plus Query 160599 TCTGGACTTCCGATCTTTTCATGAAGAGAGTGAAAGACAATGGGGATTGGAGCCTTTTCT 160658 |||||| | ||||||||||||||||| | || | | || || || |||| || | | Sbjct 451978 TCTGGATTCCCGATCTTTTCATGAAGCGTGTTGAGAAGAACGGTGAATGGACGCTCATGT 452037 Query 160659 GTCCCAATGAAGCGCCTGGACTTGATGATGTTTATGGTTCCGAGTTCGAGACTCTTTATG 160718 ||||||| || ||||| || | ||| || || || ||||||||| |||| || | Sbjct 452038 GTCCCAACGAGTGCCCTGGCCTCGCTGACGTCTACGGCGATGAGTTCGAGGCTCTGTACG 452097 Query 160719 AAAGATACGAAAAAGAGGGAAGAG---CCAAAAAGGTCGTGAAGGCCCAAGAACTGTGGC 160775 | | |||||| ||||| | | | | |||||| |||||||| |||| ||| Sbjct 452098 AGAAGTACGAAGCCGAGGGCCGTGGCCGCCAGAAGGTC---AAGGCCCAGAAACTTTGGT 452154 Query 160776 ATCACATCCTTGTCGCCCAAGTCGAGGTGGGTATGCCCTTTATCGCATACAAGGATGCCA 160835 || |||||| | || || ||| |||| || || || ||||||||| | Sbjct 452155 ATGCCATCCTCGAGGCTCAGACTGAGACTGGTAACCCATTCATGCTTTACAAGGATCACT 452214 Query 160836 TCTGTCGCAAGAGTAACCAGAAGAACTTTGGAA 160868 | |||||||| |||||||||||| | |||| Sbjct 452215 GCAACCGCAAGAGCAACCAGAAGAACCTGGGAA 452247 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1109481358341039