Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_017940.1 Length=127732 Score E Sequences producing significant alignments: (Bits) Value seq1 143 2e-29 >seq1 Length=7732581 Score = 143 bits (158), Expect = 2e-29 Identities = 237/337 (70%), Gaps = 10/337 (3%) Strand=Plus/Minus Query 30046 GGGTTCCAGGCGCACACGATGATGCGCCTGTCTTCTGGGTTGTTCCTGA---TGAGGTCC 30102 ||||||||||||| | ||||||||| | || | ||||| | ||||| || || | Sbjct 2738754 GGGTTCCAGGCGCTGAGGATGATGCGTCGATCGTACGGGTTATGCCTGAGCTTGTGGATC 2738695 Query 30103 ACGGCGTTTTGCAGCTGATCCACCCCCATCCCCGAGTAGTCTGCCCTCATGTCCGTGTAC 30162 || || ||||||||| || ||| |||| ||| || | | || |||| |||| Sbjct 2738694 ACCTCGGC---CAGCTGATCGACGCCCTGACCCGCGTAATCCGTCTTCGCGTCCACGTAC 2738638 Query 30163 TCTGCTCCGAAATGCCTCCACTGGAACCCGTACACCGGTCCCAGGTCTCCCTCTTCCCTG 30222 || || ||||| || | ||||||||||||||||||||| |||||||| ||| | || | Sbjct 2738637 TCGGCCCCGAAGTGTCGCCACTGGAACCCGTACACCGGCCCCAGGTCGCCCACCTCGCGA 2738578 Query 30223 TGCTCGA-AGCCCCTC-TTGTCCAAAAAGTCTCTGGAACCGTTGGCGTCCCAGATCTTTA 30280 || ||| || ||| | |||| | || || | || ||||| ||||||| ||||| | Sbjct 2738577 TG--CGACAGTCCCACGCTGTCGAGGAACTCGCGCGACCCGTTCCCGTCCCATATCTTGA 2738520 Query 30281 CCCCCTTCTCGGAGAGCTCTTTGGAGTTTGTGGACCCTCTGACGAACCACAGCAGCTCCT 30340 |||| ||| || ||| | || ||| ||| |||||||| || |||||| Sbjct 2738519 CCCCGGCCTCCGATAGCGCCAGCGACGACGTGTTCCCCTCCACGAACCATAGAAGCTCCG 2738460 Query 30341 CCACGACGGCCTTCCAAAAGACCCTCTTGGTCGTGAG 30377 | ||||||||||| ||||||| ||| ||||| || Sbjct 2738459 CTACGACGGCCTTGAGGAAGACCCGCTTCGTCGTCAG 2738423 Score = 111 bits (122), Expect = 1e-19 Identities = 143/195 (73%), Gaps = 2/195 (1%) Strand=Plus/Minus Query 29776 CTGGGCTCCCTCTCGAGCTGAGTCTTCAGCGGTTCCACGTGATCCAGGTAGACGTGAGCG 29835 |||||||| | ||||||||| | |||| || ||||| || ||| ||||| ||| Sbjct 2739099 CTGGGCTCGCGCTCGAGCTGCACCCGGAGCGCATCGACGTGGTCGCAGTACACGTGCGCG 2739040 Query 29836 TCTCCCAGGGTGTG-GACAAACTCTCCCGGTTCTAGCCCGGTGACGTGAGCCATCATGTA 29894 || |||| | ||| | || ||| || || | ||| || ||||| || ||||||| Sbjct 2739039 TCGCCCATGACGTGCGTCAGGCTC-CCGGGCACGAGCTCGCACACGTGCGCGATCATGTG 2738981 Query 29895 CGTGAGGAGAGAGTAGCTGGCGATGTTAAAGGGTACCCCGAGCCCCATGTCCCCCGACCT 29954 ||| ||||| | ||||||||||||||| || || || || || |||||||| | || | Sbjct 2738980 CGTCAGGAGCGCGTAGCTGGCGATGTTGAACGGCACGCCCAGGCCCATGTCGCAGGAGCG 2738921 Query 29955 CTGGTAGAGCTGACA 29969 |||||| |||||||| Sbjct 2738920 CTGGTATAGCTGACA 2738906 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 408617515339541