Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_018875.1 Length=119082 Score E Sequences producing significant alignments: (Bits) Value seq15 91.5 1e-13 seq6 84.2 2e-11 >seq15 Length=310649 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Minus Query 48564 TGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCCAACTGC 48623 || || ||| ||| || || || ||||| ||||| ||| | || |||| || | |||| Sbjct 111202 TGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCGAGCTGC 111143 Query 48624 TTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTAATCTTT 48683 || ||||| || ||||| ||||| || || | |||| || |||||||| |||||| Sbjct 111142 TTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGAATCTTG 111083 Query 48684 TGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTTCCCGTC 48743 ||| ||| | | | | || | ||||||||| | || || || || ||||| Sbjct 111082 GATTTGACATTATCGATGGTATCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTA 111023 Query 48744 AAAGTTTTTACAAAAATCTGCAT 48766 | || ||||| ||||||||||| Sbjct 111022 AGGGTCTTTACGAAAATCTGCAT 111000 >seq6 Length=3640113 Score = 84.2 bits (92), Expect = 2e-11 Identities = 144/209 (69%), Gaps = 0/209 (0%) Strand=Plus/Plus Query 48558 ACCAAATGTAGCGTGCTCTCTTTTTGAATATTGTAATCAGATAGACTTCGATCGTCGTCC 48617 ||||| || || ||| ||||| ||||| || || || || | | |||| | || ||| Sbjct 611859 ACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAGTCGGACAAAGTTCGTCCATCTTCC 611918 Query 48618 AACTGCTTACCGGCAAATATCAGTCGCTGTTGATCCGTGGGAACGCCCTCCTTGTCGCTA 48677 |||||||| || || || || || || || || || | || | ||||||||||| | Sbjct 611919 AACTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGA 611978 Query 48678 ATCTTTTGTTTTACAGAACCCACAGACTCTGACGCCTCCACCTCCACCGTAATCGTTTTT 48737 ||||| || || | | || || || | || ||||| | |||||||| || Sbjct 611979 ATCTTCGACTTGACGTTGTCGATAGTATCGGAAGATTCGACCTCGAGAGTAATCGTCTTA 612038 Query 48738 CCCGTCAAAGTTTTTACAAAAATCTGCAT 48766 |||||||| || || || || |||||||| Sbjct 612039 CCCGTCAAGGTCTTGACGAAGATCTGCAT 612067 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 380937521074491