Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_019495.1 Length=290304 Score E Sequences producing significant alignments: (Bits) Value seq11 260 3e-64 >seq11 Length=1431289 Score = 260 bits (288), Expect = 3e-64 Identities = 823/1252 (66%), Gaps = 55/1252 (4%) Strand=Plus/Minus Query 221416 CGTCAGGGCAGCGTGGTAGATGGTCTCAAAGATCATCTTGTTGAGTCTCTTGGCCTCGGG 221475 ||||| ||| ||||||||||||||||| ||||| ||||| ||| ||| ||||| || Sbjct 452609 CGTCAAGGCGGCGTGGTAGATGGTCTCGAAGATTTGTTTGTTAAGTAACTTAGCCTCAGG 452550 Query 221476 AGAAGTGAA-GGGCATACGCAGCATCT--GAAAGACGTCGGCCAGTCCCTGTACTCCGAT 221532 || ||| ||| || || || | || ||||| | ||||| || || || || || | Sbjct 452549 CGATTCGAATGGGTAT-CGGAG-AGCTAGGAAAG-CATCGGCAAGACCTTGGACACCCAA 452493 Query 221533 ACCGATGGGCCTGTGTCTCCTGTTG--GAAGCGGCCGCTTCTGGCACGGGATAAAAGTTG 221590 |||||||| | ||| | | ||||| | ||| || || || ||||| || |||| Sbjct 452492 TCCGATGGGACGGTGGCGCATGTTGCTGTTGCGA--GCCTCAGGTACGGGGTAGTGGTTG 452435 Query 221591 ACGTCGATCAGATTGTTGAGGTTCAGAGTGATGACTTTAACCACCTCGGTCAGCTTCTGG 221650 || || || | ||||| || || | || || | || || ||| || ||||||| Sbjct 452434 ACCTCAATGATCTTGTTCAGATTTCGCACGACCACCTGGACAACGTCGTGCAACTTCTGG 452375 Query 221651 TGATTGAACACCAACTCGCCGCCGTCGTGGAGGGGTTCCACAAAAGCGTTTAGGGCAACG 221710 || | | | ||| ||| || | |||||| | | || ||||| | Sbjct 452374 AAATCGTAGGC------GCCCGCGTTGTAG------TCCACATACGAAGGTAAGGCAAGG 452327 Query 221711 CTGGCCAGGTTACACACGGCCACCTCGTCCTTGTTGGTATACTGTATGATCTCTGTACAG 221770 |||||||| ||||| || ||||| || | |||| || ||||| || ||| Sbjct 452326 GAAGCCAGGTTGCACACAGCGACCTCATCAGGAGCCGAGTACTCAATAATCTCGGTGCAG 452267 Query 221771 AGGTTGCTGCACTTG--ATGGTCCCCAGGTGATTGTGATTAGACTTGCGATTGGCAGCG- 221827 ||||| | ||| || || ||||||| || || || |||||| ||| ||| | Sbjct 452266 AGGTTA--GAACTGCGAATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTG-CAGTGA 452210 Query 221828 TCCTTGTAGAGCATAAAGGGACCGCCAGTCTCCAGCTGAGCCACCAGAATCTTGTCCCAG 221887 |||||||| ||||| || || |||||||| ||||||| | || || | ||| Sbjct 452209 TCCTTGTAAAGCATGAATGGGTTACCAGTCTCAGTCTGAGCCTCGAGGATGGCATACCAA 452150 Query 221888 AGTTCTCTGGCGCTCACCGTCCTCTTGACTGCA----CCCTCGGTCTTTTCATAC--CCG 221941 |||| ||||| || | ||| || | || ||||||| ||| ||| | Sbjct 452149 AGTT-TCTGGGCCTT---GACCTTCTGGCGGCCACGGCCCTCGGC---TTCGTACTTCTC 452097 Query 221942 GTATAGAGCATGTCAAACTTTTCACCGTACGCCTCGTCCAGGCCTGGACACCTGGCGGGA 222001 ||| ||||| | | |||| || ||||| | || | ||||| || ||| | |||| Sbjct 452096 GTACAGAGCCT--CGAACTCATCGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGA 452039 Query 222002 CACATCAGACTCCAGTGCTTGTTGTCTTTGACCCTCTGCATGAAGAGGTCCGGGATCCAC 222061 ||||| || |||| | ||| | | || | || |||||| || || || ||||| Sbjct 452038 CACATGAGCGTCCATTCACCGTTCTTCTCAACACGCTTCATGAAAAGATCGGGAATCCAG 451979 Query 222062 AGCGCCTGAAAGAGATCTCTGGTCCGCTGCTCCTCCACGCCGTTGTTTTTCCTCAGATCC 222121 || || | || ||||| | | || |||||| |||| ||| || | |||||| Sbjct 451978 AGAGCAAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTACGGAGATCC 451919 Query 222122 AAAAACTCAAAAATGTCAGCGTGCCACGGCTCCAGATAGACGGCCAGAGCGCCGGGTCGC 222181 || ||||| |||| || | |||||||||||| || |||| ||| | || || |||| | Sbjct 451918 AAGAACTCGAAAACATCCGAGTGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGTCTC 451859 Query 222182 TTGTTGCCACCCTGATCCACCATCCTCTCCAGAGCGTTGAAGATGCGAAGGGTCGGTACC 222241 |||||||||||||| || || || || |||||||| ||||| | ||||| Sbjct 451858 TTGTTGCCACCCTGGTCAACGTATCTGGCCGTGTTGTTGAAGACACGAAGCATAGGTACA 451799 Query 222242 AGTCCGTTGGATCGACCGTTGGTGCCCTTAATGTACGCACCGCCGGCCCTCAGGTTACTG 222301 | ||||| || ||||||||| || |||||| | ||| | | || ||| | Sbjct 451798 ATACCGTTAGAAGTACCGTTGGTACCGGCAATGTAAGATCCGGTAGATC---GGATACGG 451742 Query 222302 GCAGACATG---CCGATACCACCGGCGTGTTTCGAGATCATGGCGCAGCTCTTGAGAGTG 222358 | || || |||||||| || || |||||||| || || ||||||| ||| Sbjct 451741 TGAACGTTGAGACCAATACCACCCGCCATCTTGGAGATCATAGCACAAGTCTTGAGGGTG 451682 Query 222359 TCCATGATGCCCTCCATAGAGTCCTCCTTGACGTTCAGCAGAAAACAAGACGACATCTGA 222418 || ||| ||||| || ||| ||||| | || | || |||||||| || | |||| Sbjct 451681 TCATAGATACCCTCAATGCTGTCATCCTTCATGTCTACAAGGAAACAAGAGGAAAGCTGA 451622 Query 222419 GATTTGGTGGAACAGGCGTTAAACAGCGTGGGACTGGCGTGTGTAAAGTAGCCCCTAGAC 222478 | | || || || |||||| || || ||||| |||||| || || || || ||| Sbjct 451621 GCCTGGGGGGTACCGGCGTTGAAAAGGGTGGGGGAGGCGTGGGTGAAATATTTGCTGGAC 451562 Query 222479 ATCAGATCGTACGTCTCTACGACTCTGGCGATGTTGTC-CCCGTGAATCTGCATGGCGCA 222537 || |||| ||| ||||| | ||| | | | || ||| ||| || | | | ||| Sbjct 451561 ATGAGATTGTATGTCTCAATGACCTTTTCAACGTCGTCACCCCAGATACCG-ACGGCAAC 451503 Query 222538 TCTCATGTACATGTACTGGGGCCTCTC--CACAGGACCCTTGGAGCTGGAGAGCAGGTAC 222595 | |||| ||||| ||| |||| ||| || || | ||||| |||| ||||| Sbjct 451502 ACGCATGATCATGTGCTGCGGCCGCTCGGCAATTTTGCCATTGAGCTTGAGA--AGGTAT 451445 Query 222596 GATTTTTCCAGAGTCTTGAACCCAAAGTAGTTGAGGTCAAAGTCTCTGCCGT 222647 ||| |||| ||||||||| |||||||| | | || ||||||| | ||| Sbjct 451444 GATCGCTCCAAAGTCTTGAAGCCAAAGTATTGGTAGTTGAAGTCTCGGTCGT 451393 Score = 161 bits (178), Expect = 2e-34 Identities = 307/451 (68%), Gaps = 15/451 (3%) Strand=Plus/Minus Query 25877 AGCGGCTGGTAGCCTTTGCTGCTGTGGAGGGCATCTTTTTCAGCGGTTCGTTTGCGGCCA 25936 |||| || | ||||| || || || ||||| ||||| ||||||||| | || || ||| Sbjct 758716 AGCGTTTGATCGCCTTCGCCGCCGTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCA 758657 Query 25937 TCTTCTGGCTCAAGCAGAAGGGGACCATGCCCGGGCTGTACTTTTCCAACGAGCTCATCA 25996 |||||||||||||| || || ||||||||| || ||| ||||||||||||||| Sbjct 758656 TCTTCTGGCTCAAGAAGCGCGGTCTCATGCCCGGCTTGACCTTCTCCAACGAGCTCATCT 758597 Query 25997 GCAGGGACGAGGGTCTCCACAGAGATTTTGCCTGCCTGCTCTACACGGGCCACTTGCTCC 26056 | | |||||||||||||||| || || ||||||||||| | | | |||| ||| Sbjct 758596 CCCGCGACGAGGGTCTCCACACCGACTTCGCCTGCCTGCTGTTCTC---CCAC---CTCA 758543 Query 26057 ACAA--ACCTTCTCAAG-AGACCGTCTACAGTATCATCAAAGAGGCTGTGGAGATCGAGA 26113 |||| || |||| ||| | | ||||||| || || || |||||||| Sbjct 758542 ACAACCGCCCCAGCAAGCAGATGATTCAGGAGATCATCATGGACGCCGTCAAGATCGAGC 758483 Query 26114 AGGAGTTTCNNNNNNNNNNNNNNNNNNNNNNNNNNNTGGGCATGAACAACAGACTCATGA 26173 ||||||| | | ||||||||| | ||||||| Sbjct 758482 AGGAGTTCCTGACCGAGGCCCTGCCTTGCGCCCTCCTCGGCATGAACTCGAACCTCATGA 758423 Query 26174 GCCAATACATTGAGTATGTGGCCGACCATCTGCT-GT-GCCAGCTGGGACTCGCCAGACT 26231 || ||||| |||| || ||||||| || || || ||| || || || | | Sbjct 758422 AGCAGTACATCGAGTTCGTCGCCGACCGCCTCCTCGTCGCC--CTCGGCAACGAGAAGGT 758365 Query 26232 CTA-CAGTACGCCTAACCCGTTCGACTTTATGGAAAACATATCGTTGGAAGGGAAGACCA 26290 ||| | || |||| |||||||||||||||||||| ||||| || | | || ||||||| Sbjct 758364 CTACCGGTCCGCC-AACCCGTTCGACTTTATGGAGAACATCTCTCTCGGCGGCAAGACCA 758306 Query 26291 ACTTCTTTGAAAAGAGGGTCGGCGACTATCA 26321 ||||||| || ||| | |||||||| || || Sbjct 758305 ACTTCTTCGAGAAGCGCGTCGGCGAGTACCA 758275 Score = 86.0 bits (94), Expect = 1e-11 Identities = 100/135 (74%), Gaps = 0/135 (0%) Strand=Plus/Minus Query 221116 GTTCACCACTTGGAAATCTCCCGAGAGCACCCTCCTCTGGTACAGGTTAGAAGTGAACGG 221175 ||| || || ||||| ||||||| ||| || | | | ||| | ||| || ||| | || Sbjct 452900 GTTAACAACCTGGAACTCTCCCGCGAGGACACGACGCGAGTAGATGTTGGAGGTGTAAGG 452841 Query 221176 TTCGATGCTCTCGTTGTTGCCCAGGATCTGAGCCGTGCTGGCGGTGGGCATGGGTGCCAC 221235 || | || ||| ||||| |||| ||| || | |||||||| ||||||||||| || || Sbjct 452840 CTCAAAGCACTCATTGTTACCCAAGATTTGCGAAGTGCTGGCTGTGGGCATGGGGGCGAC 452781 Query 221236 CAGCAGACTGTTGCG 221250 || || |||||| || Sbjct 452780 CAACAAACTGTTACG 452766 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 928844602620480