Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_020104.1 Length=1021348 Score E Sequences producing significant alignments: (Bits) Value seq6 98.7 6e-15 seq15 96.9 2e-14 seq3 91.5 1e-12 >seq6 Length=3640113 Score = 98.7 bits (108), Expect = 6e-15 Identities = 153/219 (70%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 ||| |||||||| || | ||||| || |||||| || ||||| || | | ||| Sbjct 611846 ACGGAGACGGAGGACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAGTCGGACAAAGT 611905 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 || |||||| | ||||||||||| || || |||||||| || ||||| || || || Sbjct 611906 TCGTCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGTGGGATACC 611965 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGTGTGTGAAGTTTCAAG 480730 ||||||||||||||||| ||||| || |||||||| | | || || Sbjct 611966 CTCCTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGTATCGGAAGATTCGACCTCGAG 612025 Query 480731 GGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 ||||| || ||||| || | ||||| ||||| || || Sbjct 612026 AGTAATCGTCTTACCCGTCAAGGTCTTGACGAAGATCTG 612064 >seq15 Length=310649 Score = 96.9 bits (106), Expect = 2e-14 Identities = 155/220 (70%), Gaps = 2/220 (1%) Strand=Plus/Minus Query 480551 ACGAAGACGGAGTACAAGATGAAGTGTACTTTCTTTAGAAACATTATAATCAGCTAGAGT 480610 |||||| ||||| || || ||||| || || || | || || |||| ||||| Sbjct 111221 ACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGT 111162 Query 480611 TCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGTTGATCAGGAGGAATTCC 480670 | | || || || ||||| || || || || ||||| || || || ||||||||||| Sbjct 111161 ACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCC 111102 Query 480671 TTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCAGT-GTGTGAAGTTTCAA 480729 ||||||||| |||||||| ||||||| || || ||||| | | | | || | Sbjct 111101 TTCCTTGTCCTGAATCTTGGATTTGACATTATCGATGGTATCGCTAGACTCCA-CCTCGA 111043 Query 480730 GGGTAATAGTTTTACCGGTGAGAGTCTTAACGAAAATTTG 480769 |||| ||||| || || || || ||||| |||||||| || Sbjct 111042 GGGTGATAGTCTTGCCCGTAAGGGTCTTTACGAAAATCTG 111003 >seq3 Length=5105224 Score = 91.5 bits (100), Expect = 1e-12 Identities = 104/140 (74%), Gaps = 0/140 (0%) Strand=Plus/Minus Query 474744 TTACTGTTCCAGCATATTTTAATGATTCTCAACGTCAAGCAACTAAAGATGCGGGAAGAA 474803 |||||||||| || || || || || ||||| |||||||| || || ||||| || | Sbjct 4387528 TTACTGTTCCCGCTTACTTCAACGACTCTCAGCGTCAAGCTACCAAGGATGCCGGTCAGA 4387469 Query 474804 TTGCAGGTCTTAATGTTTTACGTATTATTAATGAACCAACAGCAGCCGCACTTGCTTATG 474863 | || |||||||| ||| | ||| || | || || || || || ||||| | || |||| Sbjct 4387468 TCGCCGGTCTTAACGTTCTCCGTGTTGTCAACGAGCCTACTGCTGCCGCCTTGGCCTATG 4387409 Query 474864 GTCTTGATAAGAATTCTGAC 474883 ||||||| ||| | ||||| Sbjct 4387408 GTCTTGAGAAGGAGGCTGAC 4387389 Score = 89.7 bits (98), Expect = 3e-12 Identities = 124/171 (73%), Gaps = 2/171 (1%) Strand=Plus/Minus Query 480594 TTATAATCAGCTAGAGTTCTGTTATCTTCAAGTTGCTTTCCAGCAAAAATAAGACGTTGT 480653 || || |||| || || | | ||| || || ||||||||||| || || ||||| || Sbjct 833593 TTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATCAGACGCTGC 833534 Query 480654 TGATCAGGAGGAATTCCTTCCTTGTCTTGAATCTTTTGTTTGACAGCTTCAATAGTATCA 480713 || ||||| ||||||||||||||||| |||||||| |||||| ||||| || || Sbjct 833533 TGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCAATGGTGTCG 833474 Query 480714 G-TGTGTGAAGTTTCAAGGGTAATAGTTTTACCGGTGAGAGTCTTAACGAA 480763 | | | | || ||||| || || || || || || ||||||||||| Sbjct 833473 GAAGACTCCA-CCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 833424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 3268178470787516