Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_021312.1 Length=459984 Score E Sequences producing significant alignments: (Bits) Value seq5 141 3e-28 seq11 122 3e-22 seq7 111 5e-19 seq12 107 6e-18 >seq5 Length=3971467 Score = 141 bits (156), Expect = 3e-28 Identities = 168/225 (75%), Gaps = 2/225 (1%) Strand=Plus/Minus Query 302593 CGACGCTGAATATAACCAGTTGTAGATGTTTTTACAGCTGTATCAATTAGACCAACACGA 302652 ||||| |||||||||||||| || ||| || || || ||||| || | ||| ||||| Sbjct 2358095 CGACGTTGAATATAACCAGTCTCAGCTGTCTTGACTGCAGTATCGATCAAACCTTCACGA 2358036 Query 302653 CCACCCATAGCATGGAAGAATAGCTCTTCCGGTCGT-AGCCCCCCAATAAAGGAGCTCTC 302711 ||| |||| || |||||||| | ||| ||| ||| | || | || | ||||| |||| Sbjct 2358035 CCAGCCATGGCGTGGAAGAAAAACTCGGACGG-CGTCAAACCTCGAAGATAGGAGTTCTC 2357977 Query 302712 AACGAAACCACGCGCCTCGGGCGAATCGTCGAACTTGGTAAAGTGTGGCAGGGTCCTGTT 302771 || || ||||| ||||| || || | ||| |||||||||||| || | ||||||| Sbjct 2357976 GACAAATCCACGGGCCTCAGGAGAGTAGTCATCCTTGGTAAAGTGGGGTAATGTCCTGTA 2357917 Query 302772 CTCATAGCCGTATGGGATACGCTTTCCATCAACGTTCTGCTGTCC 302816 | | ||| | |||||||| ||||| |||||| |||||||||| Sbjct 2357916 TTTGAAACCGAAGGGGATACGTTTTCCTTCAACGATCTGCTGTCC 2357872 >seq11 Length=1431289 Score = 122 bits (134), Expect = 3e-22 Identities = 558/878 (64%), Gaps = 13/878 (1%) Strand=Plus/Minus Query 155630 GTATTCTACAATCTCACAGCACAGGTTAGAACTCTTGATGGTGCCTAAATTCTTCTGGTT 155689 ||| || | |||||| ||| ||||||||||| || || || | ||||||||||| Sbjct 452288 GTACTCAATAATCTCGGTGCAGAGGTTAGAACTGCGAATAGTTCCCAGGTTCTTCTGGTT 452229 Query 155690 AGATTTACTGTTACAAGCATCCTTGTATAGAATGTATGGGGTTCCTGTCTCCATCTGTGC 155749 || | ||| || ||||||||| || ||| ||||| | || ||||| |||| || Sbjct 452228 GCTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAATGGGTTACCAGTCTCAGTCTGAGC 452169 Query 155750 GTCCAGAATCTTTAGCCAGAGGTCACGGGCATTAATTTGCTTGTTGTATCTGCCTTCCGA 155809 || || || ||| || | |||| || | | || | | | ||| || | Sbjct 452168 CTCGAGGATGGCATACCAAAGTTTCTGGGCCTTGACCTTCTGGCGGCCACGGCCCTCGGC 452109 Query 155810 CTCATATTTCATATACAGCGTTCGGTAATCCTCACCGTAACAATCACTCAGTCCAGGGCA 155869 || || ||| ||||| | | | || || ||||| ||| || |||||||| Sbjct 452108 TTCGTACTTCTCGTACAGAGCCTCGAACTCATCGCCGTAGACGTCAGCGAGGCCAGGGCA 452049 Query 155870 CTTATCGGGGCAAAACAGCGACCA---AATTTTATTACCGATTACACGCTCCATAAATAC 155926 || | ||| || | |||| ||| | || || | | |||||| ||| || | Sbjct 452048 CTCGTTGGGACACATGAGCGTCCATTCACCGTTCTTCTCAA---CACGCTTCATGAAAAG 451992 Query 155927 ATCACTCGCCCAAATAGCATAGAAAAGGTCCCTTGCCTTTGACTCCTCATCGCCGTGATT 155986 ||| ||| | |||| |||||| || | || ||||| | ||||| || Sbjct 451991 ATCGGGAATCCAGAGAGCAAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTT 451932 Query 155987 CTTCCGTAGCTCTAAGAATTCCTCAATATCAGGATGGTGTGGCTCCAGATACATAGCAAA 156046 ||| || || || ||||| || || ||| | || ||||| || || || ||||| Sbjct 451931 CTTACGGAGATCCAAGAACTCGAAAACATCCGAGTGCCACGGCTCGAGGTAGATGGCAAA 451872 Query 156047 ACTACCATTCCTCTTG---CCACCCTGATCTACATACCGAGCAGTCTTATTGAAGACACC 156103 |||| |||||| |||||||| || || || | || || || |||||||||| Sbjct 451871 GGCACCAGGTCTCTTGTTGCCACCCTGGTCAACGTATCTGGCCGTGTTGTTGAAGACACG 451812 Query 156104 TAGCATAGGAATAATACCATTGGAAGTGCCATTGGTTCCGCGAATATGCGAACCAGATGA 156163 |||||||| | |||||| || ||||| || ||||| ||| ||| | || || | || Sbjct 451811 AAGCATAGGTACAATACCGTTAGAAGTACCGTTGGTACCGGCAATGTAAGATCCGGTAGA 451752 Query 156164 GCGAACATTATGAATATGTAGTCCAATACCACCTGACCAT-TTAGAAATTTGAGCGCATT 156222 || | | |||| | || ||||||||||| | |||| || || || ||| || Sbjct 451751 TCGGATACGGTGAACGTTGAGACCAATACCACCCG-CCATCTTGGAGATCATAGCACAAG 451693 Query 156223 CCTTTACAGTATTGAAAATACCTTCAATAGAATCATCTTCCATTGATAGTAGATAGCACG 156282 ||| | || | | ||||| ||||| ||||| | ||| || || | || | Sbjct 451692 TCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCTACAAGGAAACAAG 451633 Query 156283 AACTTAATTGAGGTCGTGGTGTTCCAGCGTTGAATAGTGTAGGTGTTGCATGAATAAAAT 156342 | | |||| | || || || |||||||| || || || | || || | |||| Sbjct 451632 AGGAAAGCTGAGCCTGGGGGGTACCGGCGTTGAAAAGGGTGGGGGAGGCGTGGGTGAAAT 451573 Query 156343 ACTTATTAGACATATAATCGTATGTCTCCTTAATCTTCTCAA-GATTAGACCCGTGAATA 156401 | || | ||||| || ||||||||| | | ||| |||| | |||| | ||| Sbjct 451572 ATTTGCTGGACATGAGATTGTATGTCTCAATGACCTTTTCAACGTCGTCACCCCAG-ATA 451514 Query 156402 CAGATAGAGACCCTCATCCACATATGCTGAGGACGCTCTACAATCACTCCATCAATTCGC 156461 | || | || | ||| ||| ||||| || ||||| |||| |||| | Sbjct 451513 CCGACGGCAACACGCATGATCATGTGCTGCGGCCGCTCGGCAATTTTGCCATTGAGCTTG 451454 Query 156462 AGAAGGTATGCGCGTTCCAGAGTTTTAAACCCGAAATA 156499 |||||||||| || |||| ||| || || || || || Sbjct 451453 AGAAGGTATGATCGCTCCAAAGTCTTGAAGCCAAAGTA 451416 >seq7 Length=3606555 Score = 111 bits (122), Expect = 5e-19 Identities = 175/251 (70%), Gaps = 0/251 (0%) Strand=Plus/Minus Query 251407 ATAAGACCACACTTATTACACACATGGACGCTGTAAGCATCAGATGCGTCATATAGCCGA 251466 || || ||||| | | ||| | ||| || ||| | || || || | || | || || Sbjct 472944 ATTAGGCCACAGATCTCACAAATATGCACTCTGAATGCGTCCGAGACTTCGAACAGTCGC 472885 Query 251467 CCCTTGGTGAAGCGAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAA 251526 ||||| ||| || |||||||| | ||||||||||||||| |||||||| |||||| Sbjct 472884 TCCTTGAGGAAAGCAGCCGCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCGAAA 472825 Query 251527 CGAAGACCACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGA 251586 || |||||||| ||||| || | ||| ||| |||| ||||| || | | | | ||| Sbjct 472824 CGCAGACCACCGTCGCGGGCACGACCTTCGACAGGTTGACGGGTCATAATCTGAACTGGA 472765 Query 251587 CCGATGGAGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAATGCG 251646 ||| || || || ||| || | ||||| || |||||||||||| ||| Sbjct 472764 CCGCGGGCACGAGCGTGAATCTTGTCGTCCACCATGTGTCGGAGACGCTGGTAATATGTA 472705 Query 251647 GGACCGATGAA 251657 ||||||| ||| Sbjct 472704 GGACCGAAGAA 472694 Score = 86.0 bits (94), Expect = 2e-11 Identities = 105/141 (74%), Gaps = 2/141 (1%) Strand=Plus/Minus Query 233273 GCACCGTGAGCAATCATACAATCACGTTCCATTTCACCAATACGCAGACCACCATCATTT 233332 ||||||||||||||||||||||||||||||||||| || | |||||||||||| || Sbjct 472866 GCACCGTGAGCAATCATACAATCACGTTCCATTTCTCCGAAACGCAGACCACCGTCGCGG 472807 Query 233333 GACCTACCCTGGACTGTTTGACGAGTTA-AAACAGTTCTTGGACCCTGAGCACGATAATT 233391 | | ||| | ||| | |||||| || | || | | | |||||| | |||||| | Sbjct 472806 GCACGACCTTCGACAGGTTGACGGGTCATAATCTGAAC-TGGACCGCGGGCACGAGCGTG 472748 Query 233392 AATTTTATCTTTAACCATATG 233412 ||| || || | ||||| || Sbjct 472747 AATCTTGTCGTCCACCATGTG 472727 >seq12 Length=872789 Score = 107 bits (118), Expect = 6e-18 Identities = 126/169 (75%), Gaps = 1/169 (1%) Strand=Plus/Minus Query 251475 GAAGC-GAGATGCACCGTGTGAAATCATACAATCACGCTCCATTTCACCGAAACGAAGAC 251533 ||||| | || ||||||| | |||| ||||||||| ||||||||||| ||||| |||| Sbjct 698592 GAAGCTGCGAGGCACCGTACGCGATCAAACAATCACGTTCCATTTCACCCAAACGCAGAC 698533 Query 251534 CACCATCGCGAGCCCTACCCTCGGCAGGCTGACGAGTGAGATTAACCATAGGACCGATGG 251593 |||||||||||| || || |||| |||||||| ||||| | | || || | Sbjct 698532 CACCATCGCGAGATCTTCCTTCGGTCGGCTGACGGGTGAGCAAAGCACGTGGTCCTCGAG 698473 Query 251594 AGCGGCTATGTTGCTTATCATTTACCATATGCTTGAGACGCTGGTAGAA 251642 ||||| ||| ||| || | ||||| |||||||| || |||||||| Sbjct 698472 AGCGGGAATGCATCTTGTCTTGAACCATGTGCTTGAGCCGTTGGTAGAA 698424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1471817279419729