Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_021858.1 Length=1908524 Score E Sequences producing significant alignments: (Bits) Value seq11 176 6e-38 seq1 123 3e-22 seq9 122 1e-21 >seq11 Length=1431289 Score = 176 bits (194), Expect = 6e-38 Identities = 237/324 (73%), Gaps = 11/324 (3%) Strand=Plus/Plus Query 868691 GCCTTGGCGTACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGAGCGAGATC 868750 ||||| ||||||||| |||||| |||||| |||||||||||||| |||| ||||| Sbjct 758269 GCCTTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATG 758328 Query 868751 AACTCCATCCACGGGAACGGGTTGGGCGTCTTGTAGTGCTTTTCGCATCCGAGCGACGCG 868810 |||||| | ||||||||||| | | |||| ||| ||| ||||| | || Sbjct 758329 TTCTCCATAAAGTCGAACGGGTTGGCGGACCGGTAGACCTTCTCGTTGCCGAGGGCGACG 758388 Query 868811 AGCAGGCGGTCGGCGACAAACTCGATGTACTGGCACATGAGGCCGGCGTTCATGCCGATG 868870 || |||||||||||||| |||||||||||||| ||||||| | ||||||||||| | Sbjct 758389 AGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTCGAGTTCATGCCGAGG 758448 Query 868871 AGCGCCACCGGCAGCGACTCGCTCACAAACTCTTTCTCGATCTCGACGGCCTCGACGATG 868930 || || ||||| | |||| ||| ||||| | |||||||| |||||| || | |||| Sbjct 758449 AGGGCGCAAGGCAGGGCCTCGGTCAGGAACTCCTGCTCGATCTTGACGGCGTCCATGATG 758508 Query 868931 ATCTGCCTGGGCACGTCGGC---CGAGGGC--TTGTTGACGAGCATCGTGTAGAGCAGGC 868985 |||| |||| | || || | |||| ||||||| | | | | | ||||||| Sbjct 758509 ATCT-CCTGAAT-CATCTGCTTGCTGGGGCGGTTGTTGAGGTGG---GAGAACAGCAGGC 758563 Query 868986 AGGCAAAGTCGCAGTGCA-ACCCT 869008 |||| |||||| ||| | ||||| Sbjct 758564 AGGCGAAGTCGGTGTGGAGACCCT 758587 Score = 104 bits (114), Expect = 3e-16 Identities = 141/195 (72%), Gaps = 9/195 (5%) Strand=Plus/Plus Query 869179 ACCTTCGTCGCGACTGATCATTTCGTTGCTAAAGGCGAGGCCGGGCATGAGGCCGCGCTT 869238 ||| |||||||| ||| | |||||| |||| | |||||||||||| |||||||| Sbjct 758583 ACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAAGCCGGGCATGAGACCGCGCTT 758642 Query 869239 CTTGAGCCAAAAGATGGCGCAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 869298 ||||||||| ||||||| | ||| || ||| ||||| |||||||||||||| || Sbjct 758643 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCGAA 758702 Query 869299 GCCGATGAGCCGCTCGGCAAAGGTGTCGAGGCCCTCCTTGT---TGATCCACTTCATCGC 869355 | |||| | |||| || || ||||| || ||||| |||||| | || Sbjct 758703 GGCGATCAAACGCTGAGCGAA--AGTCGA----CTGCTTGTCGGCGATCCATCGGAGAGC 758756 Query 869356 CCAGTCGGCCTTTTT 869370 |||||||||||| || Sbjct 758757 CCAGTCGGCCTTCTT 758771 Score = 91.5 bits (100), Expect = 2e-12 Identities = 175/258 (68%), Gaps = 0/258 (0%) Strand=Plus/Minus Query 1630065 CTGGTCGACGTAGCGCGCCGTGTCGTTAAAGACGCGGAGCATGGGCACGAGGCCGTTGGA 1630124 |||||| ||||| | ||||||| ||| ||||| || ||||| || || | ||||| || Sbjct 451847 CTGGTCAACGTATCTGGCCGTGTTGTTGAAGACACGAAGCATAGGTACAATACCGTTAGA 451788 Query 1630125 CTCGCCGTTGGTGCCCGCCACGTAGGCGCCGGCGGCGCGCACCTTGTGCGCGGCAAAGCC 1630184 |||||||| || || | ||| | |||| | || | ||| || | || Sbjct 451787 AGTACCGTTGGTACCGGCAATGTAAGATCCGGTAGATCGGATACGGTGAACGTTGAGACC 451728 Query 1630185 GATGCCGCCGGCCGACTTGGAGATGAGCGCGCACTGTTTGAGCGTGTCGTAGATGCCCTC 1630244 || || || ||| ||||||||| | || || ||||| ||||| ||||| ||||| Sbjct 451727 AATACCACCCGCCATCTTGGAGATCATAGCACAAGTCTTGAGGGTGTCATAGATACCCTC 451668 Query 1630245 GATCGAGTCGGCCTTCATGTCCACGAGAAAGCACGACGAGTTTTGCGGGTGCGCCGTGCC 1630304 || ||| |||||||||| || || || || || || || | || | || || Sbjct 451667 AATGCTGTCATCCTTCATGTCTACAAGGAAACAAGAGGAAAGCTGAGCCTGGGGGGTACC 451608 Query 1630305 GGCGTTGAAGAGCGTGGG 1630322 ||||||||| || ||||| Sbjct 451607 GGCGTTGAAAAGGGTGGG 451590 >seq1 Length=7732581 Score = 123 bits (136), Expect = 3e-22 Identities = 184/259 (71%), Gaps = 4/259 (2%) Strand=Plus/Minus Query 1574008 TCGACGTCGTGCGCAAGATCATCAAGCACCACGCCTCCAAGAGGATCGACCTGCCGCCCG 1574067 |||||||||| || || |||||| | |||| |||| | || |||||| | | Sbjct 1440584 TCGACGTCGTACGAAACCGAATCAAGGGCTTCGCCCAAAAGAAGGTCACCCTGCCAGCGG 1440525 Query 1574068 GACGCCACAAGGTGATCATCCTCGACGAGGCCGACTGCCTCACGTCGGCGGCCCAGCAGG 1574127 |||| |||||| | | ||||||||||| |||||| || | ||||||| || ||||||| Sbjct 1440524 GACGGCACAAGCTCGTGATCCTCGACGAAGCCGACAGCATGACGTCGGGAGCGCAGCAGG 1440465 Query 1574128 CCCTGCGGTCCACCATGGAAAAGCACACCAACACGACGCGCTTTGCCCTGGCGTGCAACA 1574187 | |||||| || ||||| | || | ||||||||||| || || | ||||||||| Sbjct 1440464 CGCTGCGGAGGACGATGGAGATCTACTCGAACACGACGCGGTTCGCGTTCGCGTGCAACC 1440405 Query 1574188 CGTCGTCGATGGTCATCGAGGCCCTCCAAAGTCGC--TGCGCCATTCTGCGCTTTGTGCG 1574245 |||| | | |||||||| | || | |||||| ||||| || ||||| | | || Sbjct 1440404 AGTCGAACAAGATCATCGAGCCGCTGC--AGTCGCGGTGCGCGATCCTGCGGTACGGCCG 1440347 Query 1574246 CCTGGGTGACGCCCAGATA 1574264 ||| ||||| ||| || Sbjct 1440346 GCTGACGGACGCGCAGGTA 1440328 >seq9 Length=2438593 Score = 122 bits (134), Expect = 1e-21 Identities = 91/107 (85%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 1592190 CCAACTACCTCGACATCAAGCCTCTGCTCGATCTTGGGTGCAAGTCTGTGGCCAACATGA 1592249 ||||||| ||||| |||||||| || |||||| | || |||||| ||||||||||||||| Sbjct 375101 CCAACTATCTCGATATCAAGCCCCTCCTCGATGTCGGTTGCAAGACTGTGGCCAACATGA 375042 Query 1592250 TCAAGGGCAAGTCGCCCGAGGAGATCCGCAAGACCTTTAACATCAAG 1592296 |||||||||| || ||||| ||||| || ||||| || |||||| || Sbjct 375041 TCAAGGGCAAATCCCCCGACGAGATTCGAAAGACATTCAACATCCAG 374995 Score = 98.7 bits (108), Expect = 1e-14 Identities = 114/154 (74%), Gaps = 0/154 (0%) Strand=Plus/Plus Query 19045 AGGACAGCATCGGCGGCACGGTGACGTGCGTGTGTCGCAACGTGCCGGCAGGCCTCGGCG 19104 ||||||||||||| |||||||| ||||| || || ||||| ||| | || || |||| Sbjct 609258 AGGACAGCATCGGAGGCACGGTCACGTGTGTTATCCGAAACGTCCCGACCGGACTTGGCG 609317 Query 19105 AGCCGTGCTTTGACAAGATCGAGGCCGCGCTCGCCCACGCCATGCTGTCGATCCCGGCCA 19164 ||||| || ||||| ||||| |||||||||||| ||||| || || || | Sbjct 609318 AGCCGGTGTTCTCGAAGATGGAGGCGACGCTCGCCCACGGGATGCTCAGCATTCCCGCGA 609377 Query 19165 CCAAGGGATTCGAGATTGGCAGCGGGTTTGCGGG 19198 | |||||||| || || ||| ||| || ||||| Sbjct 609378 CGAAGGGATTTGAAATCGGCTCCGGATTCGCGGG 609411 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 6107137804900389