Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_021923.1 Length=140633 Score E Sequences producing significant alignments: (Bits) Value seq11 141 8e-29 seq6 111 1e-19 >seq11 Length=1431289 Score = 141 bits (156), Expect = 8e-29 Identities = 736/1151 (64%), Gaps = 60/1151 (5%) Strand=Plus/Minus Query 138508 ACCTGAAATTCACCGGCCAATACTCGACGAACGTAAATGTTGTTGGTGAAAGGCTCAAAC 138567 ||||| || || || || | || ||||| ||| |||||| |||| |||||||||| Sbjct 452893 ACCTGGAACTCTCCCGCGAGGACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCAAAG 452834 Query 138568 GATTCGTTGTTTCCCAGAATCTGAGCCGTGGTCGCGGTCGGCATGTACGCCACCAAAAGA 138627 | || ||||| |||| || || | ||| | || || |||||| || ||||| | | Sbjct 452833 CACTCATTGTTACCCAAGATTTGCGAAGTGCTGGCTGTGGGCATGGGGGCGACCAACAAA 452774 Query 138628 GAATTCCGTAAACCGTGAAGCTTGATTCGTTCCTTGAGCGACGA--CCAGTCCCACAAAT 138685 || || | |||||| ||||||| | | ||| || || | ||||||||| | || Sbjct 452773 CTGTTACGGACACCGTGCTGCTTGATCTGCTGCTTTAG--ACTATCCCAGTCCCAGAGAT 452716 Query 138686 CGCTAGGTTTTTTGTTCCACATATCGTACTGTAACATTCCC----AAACTTGCGGGACTG 138741 || | || || | |||||| ||||| || | || ||| | || | ||| | Sbjct 452715 CGGTGGGCTTGACATCCCACATGTCGTATTGAAGGATACCCTGGGAGACCGG--GGA--G 452660 Query 138742 CCTTCGTACGAATCGTATACACCAAACTCTTGCGCCAACTCGTTGCTCGCC-TCGAGCGC 138800 || ||||| |||| ||| | || | || | ||| || |||| || || || Sbjct 452659 CCCTCGTAGCTGGCGTAGGGACCGAGTTCCTTAGCGAGCTCCATGGACGCCGTCAAG-GC 452601 Query 138801 ACCATAGTAAATAGTTTCGGCAATCTGCTGATTGAGCAATCGGGCCTC-GGCGCTCTCGT 138859 | | ||| || || ||| || || | || || || ||||| |||| | ||| Sbjct 452600 GGCGTGGTAGATGGTCTCGAAGATTTGTTTGTTAAGTAACTTAGCCTCAGGCGAT-TCGA 452542 Query 138860 ACGGCATGCGGAGCATCGTGAACGCGTCGGCCAGCCCTTGCACGCCCACTCCGACAGGGC 138919 | || ||||| ||| || ||||| || ||||| || |||| ||||| || | Sbjct 452541 ATGGGTATCGGAGAGCTAGGAAAGCATCGGCAAGACCTTGGACACCCAATCCGATGGGAC 452482 Query 138920 GATGGCGCAGATTTGACGCTTTTGCG-GCTTC-GATA--GGATAATAGTTTACATCGATG 138975 | ||||||| || ||| ||||| || || | || || || | ||| || || ||| Sbjct 452481 GGTGGCGCATGTT----GCTGTTGCGAGCCTCAGGTACGGGGTAGTGGTTGACCTCAATG 452426 Query 138976 ATTTTGTTTAAATTTCGCACGACCACCTTA-----GTCGTATGCTTTAATCGTTCAAAAT 139030 || ||||| | ||||||||||||||||| ||||| || || | |||| Sbjct 452425 ATCTTGTTCAGATTTCGCACGACCACCTGGACAACGTCGT--GC---AACTTCTGGAAAT 452371 Query 139031 CGTATGTGCCCCCGTTGTCGTCGACGACGTCGACAAATTTGTTGACACAAATCGAGGCTA 139090 |||| | |||| |||||| ||| || || || | | | ||| || || | Sbjct 452370 CGTAGGCGCCCGCGTTGTAGTCCACAT-----ACGAA---GGTAAGGCAAGG-GAAGCCA 452320 Query 139091 TGTTGCACACCGCCACTTCGTCGGGGTCGCTGTATTCGACAATTTCGGCACACAAATTAC 139150 ||||||||| || || || || || | ||| || | ||| |||| || | ||| Sbjct 452319 GGTTGCACACAGCGACCTCATCAGGAGCCGAGTACTCAATAATCTCGGTGCAGAGGTTAG 452260 Query 139151 TACACTTGATCGTACCTAAATTTTGTTGATTGCTTTTTCGGTTACAAGCATCTTTGTAAA 139210 || || || || | || | || ||||| || ||||| || ||| ||||||| Sbjct 452259 AACTGCGAATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAAA 452200 Query 139211 GCATATACGGTGTGCCAGTTTCCACTTGTGTCTCTATAATGAATTTGAACAAGTCCCTAG 139270 |||| | || | ||||| || || | ||| | ||| | | |||| || | Sbjct 452199 GCATGAATGGGTTACCAGTCTCAGTCTGAGCCTCGAGGATGGCATACCA-AAGTTTCTGG 452141 Query 139271 --CTTGTATTTGACGCACGTAAAGTTCGTCGCGCTCGTACTTTTCGTAGAGTTCGTCGAA 139328 |||| || || | | | | ||| |||||||| ||||| || | ||||| Sbjct 452140 GCCTTGACCTTCTGGCG-GCCACGGCCCTCGGCTTCGTACTTCTCGTACAGAGCCTCGAA 452082 Query 139329 TCGTTCACCGTAGGCGTCAGAAAGATCGCGACACTTGTCAGGACACATGAGCGACCATAC 139388 || |||||| |||||| || | | |||| || ||||||||||||| |||| | Sbjct 452081 CTCATCGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATGAGCGTCCATTC 452022 Query 139389 GCCGTTCGCCTTGACGCGCCTCATGAACAGATCCGGAATCCACAAAGCGAACAGCAAATC 139448 |||||| || || ||| ||||||| ||||| |||||||| | ||| | | | ||| Sbjct 452021 ACCGTTCTTCTCAACACGCTTCATGAAAAGATCGGGAATCCAGAGAGCAAGGAAAAGATC 451962 Query 139449 GCGCGC-----CTTCTTATCTTCCGAACCCATGTTACGTTTCATGTTAAGGAAATCAAAA 139503 ||| || |||| | ||||| | ||||| | | | ||| || ||| Sbjct 451961 GCGAGCGCGAACTTCCTCCTTTCCG--TGGTTCTTACG---GAGATCCAAGAACTCGAAA 451907 Query 139504 ACGTCAGCGTGCCATGGTTCCAGATAGATGGCCATTGCGCC---TTTCCGTTTGCCACCT 139560 || || | |||||| || || || |||||||| | || || | || |||||||| Sbjct 451906 ACATCCGAGTGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGTCTCTTGTTGCCACCC 451847 Query 139561 TGATCGACGTGTCGTACAGCATTATTGAATACGCGCAACATCGGCTCCAGACCGCTCGCT 139620 || || |||| || | | || ||||| || || | ||| || | | |||| | | Sbjct 451846 TGGTCAACGTATCTGGCCGTGTTGTTGAAGACACGAAGCATAGGTACAATACCGTTAGAA 451787 Query 139621 GTTCCGTTGGT 139631 || |||||||| Sbjct 451786 GTACCGTTGGT 451776 >seq6 Length=3640113 Score = 111 bits (122), Expect = 1e-19 Identities = 150/209 (72%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 24704 ATGCAGATCTTTATTAAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACC 24763 ||||||||||| | || || | || ||||| || ||||| ||||| || ||| | || Sbjct 612067 ATGCAGATCTTCGTCAAGACCTTGACGGGTAAGACGATTACTCTCGAGGTCGAATCTTCC 612008 Query 24764 GACACAGTAGAAACGGTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAA 24823 || || | || | || || ||||| |||||||| || || || || || || || Sbjct 612007 GATACTATCGACAACGTCAAGTCGAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAG 611948 Query 24824 CAACGTTTGATCTTTGCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAAC 24883 |||||| | ||||| || || || ||| |||| ||| ||| |||| || |||||| Sbjct 611947 CAACGTCTCATCTTCGCTGGAAAGCAGTTGGAAGATGGACGAACTTTGTCCGACTATAAC 611888 Query 24884 ATTCAAAAGGAATCGACACTACACTTGGT 24912 ||||| || ||||| || || |||||||| Sbjct 611887 ATTCAGAAAGAATCCACCCTTCACTTGGT 611859 Score = 89.7 bits (98), Expect = 5e-13 Identities = 133/189 (70%), Gaps = 0/189 (0%) Strand=Plus/Minus Query 24719 AAAACGCTAACCGGTAAAACTATTACGCTCGAAGTAGAAGCCACCGACACAGTAGAAACG 24778 || || || ||||| || || || || || || || || | ||||||| | || | Sbjct 612280 AAGACCCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCCGACACCATTGACAAC 612221 Query 24779 GTAAAACAAAAGATCCAAGACAAAGAAGGAATACCTCCCGATCAACAACGTTTGATCTTT 24838 || || |||||||| || || || || || |||||||| || || || ||||||||| Sbjct 612220 GTCAAGTCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGCGATTGATCTTT 612161 Query 24839 GCCGGGAAACAGCTGGAGGATTCGAGAAACATGTCAGATTATAACATTCAAAAGGAATCG 24898 || || || ||||| |||||| | | | | || || || |||||||| ||||| || Sbjct 612160 GCTGGTAAGCAGCTCGAGGATGGCCGTACCCTTTCGGACTACAACATTCAGAAGGAGTCC 612101 Query 24899 ACACTACAC 24907 || || ||| Sbjct 612100 ACTCTCCAC 612092 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 449897504396760