Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_022098.1 Length=2473870 Score E Sequences producing significant alignments: (Bits) Value seq11 188 1e-41 seq1 125 1e-22 seq9 116 6e-20 seq2 98.7 2e-14 >seq11 Length=1431289 Score = 188 bits (208), Expect = 1e-41 Identities = 199/259 (77%), Gaps = 5/259 (2%) Strand=Plus/Plus Query 793891 TGACGCCCGCCTTGGCATACTCGCCCACGCGCCGCTCGAAAAAGTTGGTCTTGCCCTCGA 793950 ||||||| ||||| |||||||| |||||| |||||| |||||||||||||| ||| Sbjct 758261 TGACGCCGGCCTTCTGGTACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGA 758320 Query 793951 GCGAGATCAACTCCATCCACGGGAACGGGTTGGCCGTCAGGTAGTGCTTCTCGCACCCGA 794010 | ||||| |||||| | |||||||||||| | | ||||| ||||||| |||| Sbjct 758321 GAGAGATGTTCTCCATAAAGTCGAACGGGTTGGCGGACCGGTAGACCTTCTCGTTGCCGA 758380 Query 794011 --GCGACGCAAGCAGGCGGTCGGCGACGAATTCAATGTACTGGCACATGAGGGCGGCGTT 794068 |||||| || ||||||||||||||||| || |||||||| ||||||| | ||| Sbjct 758381 GGGCGACG--AGGAGGCGGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTCGAGTT 758438 Query 794069 CATGCCGATGAGCGCCACGGGCAGCGACTCGCTGACAAACTCTTTCTCGATCTCGACGGC 794128 |||||||| ||| || ||||| | |||| | | ||||| | |||||||| |||||| Sbjct 758439 CATGCCGAGGAGGGCGCAAGGCAGGGCCTCGGTCAGGAACTCCTGCTCGATCTTGACGGC 758498 Query 794129 CTCGATGATGATCTGCCTG 794147 || |||||||||| |||| Sbjct 758499 GTCCATGATGATCT-CCTG 758516 Score = 102 bits (112), Expect = 1e-15 Identities = 94/119 (79%), Gaps = 0/119 (0%) Strand=Plus/Plus Query 794548 GTGTCGATGGCGCGAAAGAGGTGGTCCTTCTCGACCGGGTCCTTGACGTAGGTGTCGATG 794607 || || |||||| || |||||| ||||| | | || ||||||| ||||||||| ||| Sbjct 758856 GTATCAATGGCGTTGAAAAGGTGGGTCTTCTGGGCGGGCTCCTTGATGTAGGTGTCAATG 758915 Query 794608 AGGAGCGAGTAGGTCTCTGAGTGGATGTTTTCGATGGCGATCTGGAAGCCATAAAAGCA 794666 || || ||||||||||| ||||||||||| || || ||||||||| || || ||||| Sbjct 758916 AGAAGAGAGTAGGTCTCGGAGTGGATGTTCTCCATCATGATCTGGAAACCGTAGAAGCA 758974 Score = 89.7 bits (98), Expect = 8e-12 Identities = 106/144 (74%), Gaps = 0/144 (0%) Strand=Plus/Plus Query 794340 ACCTTCGTCGCGACTGATCAATTCGTTGCTAAAGCAGAGGCCGGGCATGAGGCCGCGCTT 794399 ||| |||||||| ||| | |||||| ||| | |||||||||||| |||||||| Sbjct 758583 ACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAAGCCGGGCATGAGACCGCGCTT 758642 Query 794400 CTTGAGCCAAAAGATGGCACAGAAACTGCCCGAGAAAAAGATGCCCTCGACGGCGGCAAA 794459 ||||||||| ||||||| ||| || ||| ||||| |||||||||||||| || Sbjct 758643 CTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACGGCGGCGAA 758702 Query 794460 GCCGACGAGCCGCTCGGCAAAAGT 794483 | ||| | |||| || ||||| Sbjct 758703 GGCGATCAAACGCTGAGCGAAAGT 758726 >seq1 Length=7732581 Score = 125 bits (138), Expect = 1e-22 Identities = 190/269 (71%), Gaps = 5/269 (2%) Strand=Plus/Minus Query 2019177 GCTTCG---AAAAGAA--TCGACCTGCCGCCCGGCCGCCACAAGGTGATCATCCTCGATG 2019231 |||||| ||||||| || |||||| | || || |||||| | | |||||||| | Sbjct 1440557 GCTTCGCCCAAAAGAAGGTCACCCTGCCAGCGGGACGGCACAAGCTCGTGATCCTCGACG 1440498 Query 2019232 AGGCCGACTGCCTTACGTCGGCGGCCCAGCAGGCCCTCCGATCGACCATGGAAAAGTACA 2019291 | |||||| || | ||||||| || |||||||| || || ||| ||||| | ||| Sbjct 1440497 AAGCCGACAGCATGACGTCGGGAGCGCAGCAGGCGCTGCGGAGGACGATGGAGATCTACT 1440438 Query 2019292 CCAACACGACGCGGTTTGCGCTGGCCTGCAACACGTCGTCGATGGTCATCGAAGCCCTCC 2019351 | |||||||||||||| ||| | || |||||| |||| | | ||||||| | || | Sbjct 1440437 CGAACACGACGCGGTTCGCGTTCGCGTGCAACCAGTCGAACAAGATCATCGAGCCGCTGC 1440378 Query 2019352 AGAGCCGTTGCGCCATCTTGCGCTTTGCGCGCCTCACCGACGCCCAGATCGCCGCGCGTC 2019411 || || ||||| ||| |||| | | || || || ||||| ||| | | || | Sbjct 1440377 AGTCGCGGTGCGCGATCCTGCGGTACGGCCGGCTGACGGACGCGCAGGTAGTGAAACGGC 1440318 Query 2019412 TGCGCGAGATTATCGACGCCGAAAAGGTC 2019440 ||| |||| ||||| ||||| |||||| Sbjct 1440317 TGCTGCAGATCATCGAGGCCGAGAAGGTC 1440289 >seq9 Length=2438593 Score = 116 bits (128), Expect = 6e-20 Identities = 90/107 (84%), Gaps = 0/107 (0%) Strand=Plus/Minus Query 2035651 CCAACTACCTCGACATCAAGCCCCTCCTCGATTTGGGGTGCAAGACCGTGGCCAACCTTA 2035710 ||||||| ||||| |||||||||||||||||| | || |||||||| ||||||||| | | Sbjct 375101 CCAACTATCTCGATATCAAGCCCCTCCTCGATGTCGGTTGCAAGACTGTGGCCAACATGA 375042 Query 2035711 TCAAGGGCAAGTCGCCCGAGGACATCCGCAAGACCTTTAACATCAAG 2035757 |||||||||| || ||||| || || || ||||| || |||||| || Sbjct 375041 TCAAGGGCAAATCCCCCGACGAGATTCGAAAGACATTCAACATCCAG 374995 >seq2 Length=5912960 Score = 98.7 bits (108), Expect = 2e-14 Identities = 121/163 (74%), Gaps = 2/163 (1%) Strand=Plus/Minus Query 1485471 GTACTTGGTGACGGCCTTGGTACCCTCTGAGACGGCGTGCCTGGCCAGTTCGCCGCGCAT 1485530 ||||||||||||||| |||||||| || || || |||||| |||| ||||| ||| | | Sbjct 5045492 GTACTTGGTGACGGCTTTGGTACCTTCAGAAACAGCGTGCTTGGCAAGTTCACCGGGAAG 5045433 Query 1485531 GATCAGGCGCACGGCGGTCTGGATCTCGCGGGTGCCGATCGTGTTGCGCTTGTTAGTGCG 1485590 ||| ||||| || | ||||||||| || |||| ||| ||| |||||| || | Sbjct 5045432 GATAAGGCGGACTGAGGTCTGGATTTCTCGGGAAGAGATGGTGGACTTCTTGTT-GTATG 5045374 Query 1485591 C-GCCAGGCGGCCGGCCTCGGTGCCGATGCGGTCGATCATGTC 1485632 | || || || |||||||||| | | ||| |||| ||||| Sbjct 5045373 CTGCAAGCTTGCTGGCCTCGGTGGCAACGCGCTCGAAGATGTC 5045331 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7916244591632463