Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_022646.1 Length=101818 Score E Sequences producing significant alignments: (Bits) Value seq15 136 3e-27 seq6 116 2e-21 seq3 102 5e-17 >seq15 Length=310649 Score = 136 bits (150), Expect = 3e-27 Identities = 163/219 (74%), Gaps = 8/219 (4%) Strand=Plus/Minus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||||| |||| ||||||||| ||||| ||||| || || | || | || Sbjct 111211 AGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCC 111152 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| |||||||||||||| || |||||||| | || | || |||||||| Sbjct 111151 TCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCC 111092 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGAT----TCATTGGCCTCGACATCAACGGTTAT 34941 | || || |||||| || ||||||| || | | ||| || || | ||| || Sbjct 111091 TGAATCTTGGATTTGAC--AT--TATCGATGGTATCGCTAGACTCCACCTCGAGGGTGAT 111036 Query 34942 GGTCTTTCCCGTGAGGGTCTTTACAAAGATCTGCATGAT 34980 ||||| ||||| ||||||||||| || ||||||||||| Sbjct 111035 AGTCTTGCCCGTAAGGGTCTTTACGAAAATCTGCATGAT 110997 >seq6 Length=3640113 Score = 116 bits (128), Expect = 2e-21 Identities = 153/212 (72%), Gaps = 0/212 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||||| ||||| |||| || ||||||||||||||||| || | | || |||| Sbjct 611856 AGGACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAGTCGGACAAAGTTCGTCCATCT 611915 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 |||| |||||||| |||||||| || ||||||||||| | || | ||||||||||| Sbjct 611916 TCCAACTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGTGGGATACCCTCCTTGTCT 611975 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | ||||| || | || || ||| Sbjct 611976 TGAATCTTCGACTTGACGTTGTCGATAGTATCGGAAGATTCGACCTCGAGAGTAATCGTC 612035 Query 34946 TTTCCCGTGAGGGTCTTTACAAAGATCTGCAT 34977 || ||||| | |||||| || ||||||||||| Sbjct 612036 TTACCCGTCAAGGTCTTGACGAAGATCTGCAT 612067 Score = 113 bits (124), Expect = 3e-20 Identities = 145/200 (73%), Gaps = 0/200 (0%) Strand=Plus/Plus Query 34766 AGGACCAGGTGAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCG 34825 ||||| ||||| | ||| ||||||||||||||| |||||||| ||| | || |||| Sbjct 612084 AGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATCC 612143 Query 34826 TCCAGTTGCTTTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCG 34885 || || ||||| || || ||||||| ||| |||||||| | || | |||||||| || Sbjct 612144 TCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCC 612203 Query 34886 TTTATTTTTTGTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTC 34945 | || || |||||| | || | || | |||||| |||| ||| |||||| Sbjct 612204 TGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTC 612263 Query 34946 TTTCCCGTGAGGGTCTTTAC 34965 || || || |||||||| || Sbjct 612264 TTGCCGGTAAGGGTCTTGAC 612283 >seq3 Length=5105224 Score = 102 bits (112), Expect = 5e-17 Identities = 139/194 (72%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 34776 GAATGGTGCTCTCCTTCTGAATGTTATAGTCCGATAGGCTGCGCTCATCGTCCAGTTGCT 34835 ||||||| | | ||||||| ||||| ||||| || ||| | || |||| || || |||| Sbjct 833616 GAATGGTACGCACCTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCT 833557 Query 34836 TTCCGGCGAAGATCAGTCGTTGCTGGTCTTGCGGCACCCCCTCCTTGTCGTTTATTTTTT 34895 |||| ||||||||||| || |||||||| | || | || |||||||| | || || Sbjct 833556 TTCCAGCGAAGATCAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGG 833497 Query 34896 GTTTGACGGATGCTATCGATTCATTGGCCTCGACATCAACGGTTATGGTCTTTCCCGTGA 34955 ||||| | || | || | ||| || || | ||| |||||||| ||||| | Sbjct 833496 ACTTGACATTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCA 833437 Query 34956 GGGTCTTTACAAAG 34969 ||||||| || ||| Sbjct 833436 GGGTCTTAACGAAG 833423 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 325692732520523