Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_026440.1 Length=2243109 Score E Sequences producing significant alignments: (Bits) Value seq11 183 4e-40 seq1 98.7 1e-14 >seq11 Length=1431289 Score = 183 bits (202), Expect = 4e-40 Identities = 202/264 (77%), Gaps = 4/264 (2%) Strand=Plus/Minus Query 1456518 AGCAGATCATCGTCGAGGCCGTCGAGATCGAGAAAGAGTTTGTCAGCGAGTCGCTGCCGG 1456577 || |||||||| | || |||||| |||||||| | ||||| | | |||| | ||||| Sbjct 758515 AGGAGATCATCATGGACGCCGTCAAGATCGAGCAGGAGTTCCTGACCGAGGCCCTGCCTT 758456 Query 1456578 TGGCGCTCATCGGCATGAACGCCACCGCTCATGTGCCAGTACATTGAATTTTGTCGCCGA 1456637 || ||| ||||||||||| | | | |||||| |||||||| || || |||||||| Sbjct 758455 GCGCCCTCCTCGGCATGAACTCGAAC-CTCATGAAGCAGTACATCGAGTTC-GTCGCCGA 758398 Query 1456638 CCGCCTGCTCGCGGCGCTCGGCTGCGGAGAAGCACTACCGGACGGCCAACCCGTTCCCAT 1456697 |||||| |||| || |||||| || ||||| ||||||| | |||||||||||| | Sbjct 758397 CCGCCTCCTCGTCGCCCTCGGCAACG-AGAAGGTCTACCGGTCCGCCAACCCGTTCGACT 758339 Query 1456698 GGATGGAGTTGATCTCGCTCGAGGGCAAGACCAACTTTTTCGAGCGCCGCGT-GGCGAGT 1456756 |||||| ||||| |||| |||||||||||||| |||||| ||||| ||||||| Sbjct 758338 TTATGGAGAACATCTCTCTCGGCGGCAAGACCAACTTCTTCGAGAAGCGCGTCGGCGAGT 758279 Query 1456757 ACGCCAAGGCCGGCGTCACCGCCA 1456780 || ||||||||||||| |||| Sbjct 758278 ACCAGAAGGCCGGCGTCATGGCCA 758255 Score = 129 bits (142), Expect = 8e-24 Identities = 234/338 (69%), Gaps = 11/338 (3%) Strand=Plus/Minus Query 1455775 GATATGGGAAATGTACCAAAAAGGCCGAGGCCTCCTTTTGGACCGCCGAGGAGGTCGACC 1455834 ||| ||| | |||||| || |||||||||||||| || ||||| ||||||||| |||| | Sbjct 759188 GATCTGGCAGATGTAC-AAGAAGGCCGAGGCCTCTTTCTGGACTGCCGAGGAGATCGATC 759130 Query 1455835 TCGGCGCCGACACGGTCCAC--TGGGTGTCGCTGAG----CGACGACGAGCGCCATTTCA 1455888 | | || ||||| | || | || ||| || ||| | |||| Sbjct 759129 TTTCCAAGGATC---TCCACGATTGGAACAACAGAATCAACGAGGATGAGAAGTACTTCA 759073 Query 1455889 TCAAGCACGTCCTCGCCTTTTTTCGCCGCCAGCGATGGCATCGTGGCCGAGAACCTGGCC 1455948 || ||| |||| ||||| || |||||| || || ||||| ||||||||| | | Sbjct 759072 TCTCTCACATCCTTGCCTTCTT-CGCCGCTTCGGACGGTATCGTCAACGAGAACCTTGTC 759014 Query 1455949 GGCCGCTTTATGAAAGAGGTCCAATTGCCAGAGGCACGTTTGTTTTACGGGTTCCAGATC 1456008 | || || | |||||| || | || || || || | || ||||| ||||||||| Sbjct 759013 GAGCGTTTCAGCGGAGAGGTTCAGATCCCCGAAGCTCGATGCTTCTACGGTTTCCAGATC 758954 Query 1456009 GCCATCGAAAACATCCACTCTGAAACCTACTCGCTCCTGATCGACACCTACGTCAAGGAC 1456068 || || ||||||||||| || |||||||| || || || ||||||||| ||||||| Sbjct 758953 ATGATGGAGAACATCCACTCCGAGACCTACTCTCTTCTCATTGACACCTACATCAAGGAG 758894 Query 1456069 CCGGTCGAGAAGGACCACCTCTTTCGCGCCATCGACAC 1456106 || | | ||||| |||||| || |||||| || || Sbjct 758893 CCCGCCCAGAAGACCCACCTTTTCAACGCCATTGATAC 758856 Score = 107 bits (118), Expect = 3e-17 Identities = 331/507 (65%), Gaps = 25/507 (5%) Strand=Plus/Plus Query 259681 GCACAAGGAGGTCCTCGACGCTGCCATCTGCCACGGCCGAGACTTTGGCTACTCGTACTT 259740 ||| ||||| | ||||| | || ||| | ||| ||||||||| |||| ||||| Sbjct 451361 GCATAAGGATGATTTCGACTCGGCAATCGTCTACGACCGAGACTTCAACTACCAATACTT 451420 Query 259741 TGGTCTGGCGACCTTGCGCCGGTCCTACCTGACCAA----AGTGCGCGATATTGTCGTCG 259796 ||| | ||| ||| || || ||||| ||| | || || | |||| || Sbjct 451421 TGGCTTCAAGACTTTGGAGCGATCATACCTTCTCAAGCTCAATG-GCAAAATTGCCG--- 451476 Query 259797 AGCGGCCCCAGTATATGCTCATGCGTGTCGCCCTTGGCCATTATGGGTTTGCCGACGTCG 259856 ||||||| ||| | ||| |||||||||| ||| | || | |||| | | |||||| | Sbjct 451477 AGCGGCCGCAGCACATGATCATGCGTGTTGCCGTCGGTA--TCTGGGGT-GACGACGTTG 451533 Query 259857 ACAATGCGCTGGAGCACGTGCTCGCCACCTACGAGGCCATGTCGCAGCAGTTGTT-CACC 259915 | || | | ||| || ||| | |||||| ||||| | || |||| Sbjct 451534 AAAAGGTCATTGAG------------ACATACAATCTCATGTC-CAGCAAATATTTCACC 451580 Query 259916 TCAGCGACGCCCACGCTCTTTAATGCCGGCACGCCGCGCCCGCAGAATTCGTCGTGCTTT 259975 || | ||||| || || || ||||| || || | | ||| ||| || || || Sbjct 451581 CACGCCTCCCCCACCCTTTTCAACGCCGGTACCCCCCAGGCTCAGCTTTCCTCTTGTTTC 451640 Query 259976 CTGTTGGACATGAAGGCCGATTCGATCGAGGGCATCTATGACACGCTCAAGCAGTGCGCG 260035 || | |||||||||| || || ||||| ||||||||||| |||||| || || Sbjct 451641 CTTGTAGACATGAAGGATGACAGCATTGAGGGTATCTATGACACCCTCAAGACTTGTGCT 451700 Query 260036 CTCATCTCCAAGGCGGCCGGCGGCATCGGTTTTGCCGCACACAAGGTGCGCGCCGCGGGC 260095 | ||||||||| ||| || || || ||| | || ||| | || | | || Sbjct 451701 ATGATCTCCAAGATGGCGGGTGGTATTGGTCTCAACGTTCACCGTATCCGATCTACCGGA 451760 Query 260096 GCCTACGTGGCGGGCACCAACGGCCAGTCCAACGGCCTTGTGCCCATGCTTCGCGTTTTT 260155 | ||| | || || |||||||| || ||||| |||| || |||||||| || || Sbjct 451761 TCTTACATTGCCGGTACCAACGGTACTTCTAACGGTATTGTACCTATGCTTCGTGTCTTC 451820 Query 260156 AACGACACGGCGCGCTACGTCGACCAG 260182 ||| ||||||| | ||||| |||||| Sbjct 451821 AACAACACGGCCAGATACGTTGACCAG 451847 >seq1 Length=7732581 Score = 98.7 bits (108), Expect = 1e-14 Identities = 138/194 (71%), Gaps = 0/194 (0%) Strand=Plus/Plus Query 332852 TGGGCGTCAGTGAGGCGCACAAAGCGCAGGATGGCACAACGGCTCTGCAGGGCCTCGATG 332911 || ||||| || || || | | |||||||| || || || |||||| | ||||||| Sbjct 1440332 TGCGCGTCCGTCAGCCGGCCGTACCGCAGGATCGCGCACCGCGACTGCAGCGGCTCGATG 1440391 Query 332912 ACCATTGACGACGTGTTGCAGGCCAGGGCAAACCGCGTCGTATTGGTATGCTTTTCCATG 332971 | | | |||| |||||| || | || ||||||||||| || | | | ||||| Sbjct 1440392 ATCTTGTTCGACTGGTTGCACGCGAACGCGAACCGCGTCGTGTTCGAGTAGATCTCCATC 1440451 Query 332972 GTCGACCGGAGGGCCTGTTGGGCCGCCGGCGTGAGGCAGTCGGCCTCGTCGAGGATGATG 333031 ||| ||| || ||||| || || ||| ||| | || |||||| ||||||||||| | | Sbjct 1440452 GTCCTCCGCAGCGCCTGCTGCGCTCCCGACGTCATGCTGTCGGCTTCGTCGAGGATCACG 1440511 Query 333032 ATCTTGTGGCGCCC 333045 | |||||| || || Sbjct 1440512 AGCTTGTGCCGTCC 1440525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 7177809560318754