Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_026511.1 Length=140913 Score E Sequences producing significant alignments: (Bits) Value seq6 105 6e-18 seq15 95.1 1e-14 seq3 82.4 7e-11 >seq6 Length=3640113 Score = 105 bits (116), Expect = 6e-18 Identities = 163/230 (71%), Gaps = 2/230 (1%) Strand=Plus/Plus Query 35508 TTCCACCACGTAACCTCAACACCAAATGTAACGTACTCTCCTTTTGAATGTTGTAATCGG 35567 |||||||||| | | | ||||| || | ||| |||||| || |||||||| |||| Sbjct 612374 TTCCACCACGGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 612433 Query 35568 CCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAATATCAACCGCTGCTGGTCCGAAG 35627 | || || |||| || || |||||||| || || ||||| ||||||||||| | || Sbjct 612434 AGAGAGTGCGACCGTCCTCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAG 612493 Query 35628 GAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTTG-CCACCGTGTCGCTCGATTCC 35686 ||| | ||||||||| |||||| ||| | |||| | | |||||| || || Sbjct 612494 GAATACCTTCCTTGTCCTGGATCTTCGACTT-AACGTTGTCGATAGTGTCGGAAGACTCG 612552 Query 35687 ACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCACAAATATCTGCAT 35736 ||||| | ||||| || || || || | || || || || |||||||| Sbjct 612553 ACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAAATCTGCAT 612602 Score = 95.1 bits (104), Expect = 1e-14 Identities = 124/169 (73%), Gaps = 2/169 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| ||||||||||| || | | ||| || | || || ||||||||||| ||||| Sbjct 612104 CTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCGAGCTGCTTACCAGCAAA 612163 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 ||||| ||||||||||| | ||| | || |||||| ||| |||||| ||| | || Sbjct 612164 GATCAATCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGGATCTTCGACTTGA-CGT 612222 Query 35665 TG-CCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGT 35712 || | | |||||| || || ||||| | ||||| || || || || Sbjct 612223 TGTCAATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTGCCGGT 612271 Score = 93.3 bits (102), Expect = 4e-14 Identities = 138/193 (72%), Gaps = 2/193 (1%) Strand=Plus/Plus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| ||| ||| ||||| | || |||| ||||||||| || || Sbjct 611648 CTCCTTCTGGATGTTGTAGTCGCTCAAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAA 611707 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 || | || |||||||| | || | | |||||||||| |||||| ||||| || Sbjct 611708 GATAAGACGTTGCTGGTCAGGCGGGATACCCTCCTTGTCCTGGATCTTGCTCTTCAC-GT 611766 Query 35665 TGCCACCG-TGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCA 35723 || || | | || ||||||||||| | ||||| || || || || | || || | Sbjct 611767 TGTCAATGGTATCCGAAGATTCCACCTCGAGTGTGATGGTCTTTCCGGTGAGGGTCTTGA 611826 Query 35724 CAAATATCTGCAT 35736 |||| || ||||| Sbjct 611827 CAAAGATTTGCAT 611839 Score = 91.5 bits (100), Expect = 1e-13 Identities = 137/192 (71%), Gaps = 2/192 (1%) Strand=Plus/Plus Query 35546 TCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAAT 35605 || || |||||||| || |||| ||| ||||| | || |||| |||||| || || || Sbjct 611877 TCTTTCTGAATGTTATAGTCGGACAAAGTTCGTCCATCTTCCAACTGCTTTCCAGCGAAG 611936 Query 35606 ATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGTT 35665 || | || |||||||| | || | | ||||||||| ||||| ||| | ||| Sbjct 611937 ATGAGACGTTGCTGGTCAGGTGGGATACCCTCCTTGTCTTGAATCTTCGACTTGAC-GTT 611995 Query 35666 GCC-ACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | | || ||| ||||| ||||| | || ||||| ||||||||||| || || || Sbjct 611996 GTCGATAGTATCGGAAGATTCGACCTCGAGAGTAATCGTCTTACCCGTCAAGGTCTTGAC 612055 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 612056 GAAGATCTGCAT 612067 >seq15 Length=310649 Score = 95.1 bits (104), Expect = 1e-14 Identities = 136/192 (71%), Gaps = 0/192 (0%) Strand=Plus/Minus Query 35545 CTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCCGCAAA 35604 |||||| || |||||||| || | | || || |||| || |||||||| || || || Sbjct 111191 CTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAA 111132 Query 35605 TATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTCAGAGT 35664 |||| ||||||||||| | ||||| | ||||||||| ||||| || | | | Sbjct 111131 GATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGAATCTTGGATTTGACATT 111072 Query 35665 TGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTTTTCAC 35724 | | || ||||| || |||||||| | ||||| || || ||||| | || || || Sbjct 111071 ATCGATGGTATCGCTAGACTCCACCTCGAGGGTGATAGTCTTGCCCGTAAGGGTCTTTAC 111012 Query 35725 AAATATCTGCAT 35736 || |||||||| Sbjct 111011 GAAAATCTGCAT 111000 >seq3 Length=5105224 Score = 82.4 bits (90), Expect = 7e-11 Identities = 131/188 (70%), Gaps = 0/188 (0%) Strand=Plus/Minus Query 35540 GTACTCTCCTTTTGAATGTTGTAATCGGCCAAGGTTCGCTCGTCGTCCAGCTGCTTACCC 35599 |||| | |||| || |||||||| || | | ||| || | || || |||||||| || Sbjct 833611 GTACGCACCTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTTCCA 833552 Query 35600 GCAAATATCAACCGCTGCTGGTCCGAAGGAACGCTCTCCTTGTCCATGATCTTTTGCTTC 35659 || || |||| ||||||||||| | |||| | ||||||||| ||||| ||| Sbjct 833551 GCGAAGATCAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTG 833492 Query 35660 AGAGTTGCCACCGTGTCGCTCGATTCCACCTCCACCGTGATCGTTTTACCCGTCAAAGTT 35719 | | | | | |||||| || |||||||| | ||||| || || ||||||| || Sbjct 833491 ACATTGTCAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTC 833432 Query 35720 TTCACAAA 35727 || || || Sbjct 833431 TTAACGAA 833424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 450793504206360