Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_026922.1 Length=157977 Score E Sequences producing significant alignments: (Bits) Value seq6 131 2e-25 seq15 120 3e-22 seq3 96.9 4e-15 >seq6 Length=3640113 Score = 131 bits (144), Expect = 2e-25 Identities = 173/240 (72%), Gaps = 0/240 (0%) Strand=Plus/Plus Query 134485 TTCCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC 134544 |||| || | ||| || | || | ||| || || || ||||| || |||||||||||| Sbjct 612374 TTCCACCACGGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTCGG 612433 Query 134545 CAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCG 134604 | ||| || ||| ||||| || || || || |||||||| |||||||| || || | Sbjct 612434 AGAGAGTGCGACCGTCCTCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGGAG 612493 Query 134605 GTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCA 134664 | || ||||| || || || || || || || ||| | |||||||| || || | Sbjct 612494 GAATACCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATAGTGTCGGAAGACTCGA 612553 Query 134665 CGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCATTTTGTTTTTGT 134724 | || ||||| ||||| || ||||| | || ||||||||||| ||||| ||| || ||| Sbjct 612554 CCTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAAATCTGCATCTTGGTTGTGT 612613 Score = 116 bits (128), Expect = 4e-21 Identities = 145/199 (73%), Gaps = 0/199 (0%) Strand=Plus/Plus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 || ||||| || ||||| ||||| |||||||||||||| || ||| | || ||| Sbjct 612087 ACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTCCGAAAGGGTACGGCCATCCTCG 612146 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| || || ||||| ||||| |||||||| ||||| || ||||| || || || || Sbjct 612147 AGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGGAGGGATGCCCTCCTTATCCTGG 612206 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || ||||| ||| | |||||||| || || || || || || ||||| || Sbjct 612207 ATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTCGACCTCAAGGGTGATGGTCTTG 612266 Query 134685 CCGGTTAAAGTTTTAACGA 134703 ||||| | || || |||| Sbjct 612267 CCGGTAAGGGTCTTGACGA 612285 Score = 104 bits (114), Expect = 2e-17 Identities = 159/227 (70%), Gaps = 0/227 (0%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCA 134546 || || | ||| || | || | ||| || |||||||| || |||||||| |||||| Sbjct 611841 CCACCACGGAGACGGAGGACCAAGTGAAGGGTGGATTCTTTCTGAATGTTATAGTCGGAC 611900 Query 134547 ACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGT 134606 | || | || || | ||| || || || || || | ||| ||||| || || || Sbjct 611901 AAAGTTCGTCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGTTGCTGGTCAGGTGGG 611960 Query 134607 ATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACG 134666 || || || || |||||||| || ||||| ||| | || ||||| ||||| || Sbjct 611961 ATACCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGTATCGGAAGATTCGACC 612020 Query 134667 TCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||||||||| || ||||| || || || || ||||| || ||||| Sbjct 612021 TCGAGAGTAATCGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 612067 Score = 89.7 bits (98), Expect = 5e-13 Identities = 158/228 (69%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 134487 CCTCCTCTGAGTCGCAACACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGC-C 134545 || || | ||| || | || | ||| || || || ||||| || ||||||||||||| | Sbjct 611613 CCACCACGGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 611672 Query 134546 AACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGG 134605 || | | | | || || | ||| || || || || || | ||| ||||| || ||||| Sbjct 611673 AAAGTTCGGCCA-TCCTCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGG 611731 Query 134606 TATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCAC 134665 || || || || || || || || || || ||| | || || || |||||||| Sbjct 611732 GATACCCTCCTTGTCCTGGATCTTGCTCTTCACGTTGTCAATGGTATCCGAAGATTCCAC 611791 Query 134666 GTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 ||||| || ||||| || ||||| | || || || || |||||||| Sbjct 611792 CTCGAGTGTGATGGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 611839 >seq15 Length=310649 Score = 120 bits (132), Expect = 3e-22 Identities = 152/209 (73%), Gaps = 0/209 (0%) Strand=Plus/Minus Query 134505 ACGAGGTGTAGCGTGGATTCCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCG 134564 |||||||| || ||||| ||||| || ||||||||||| || || | ||| ||| Sbjct 111208 ACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGAAAGAGTACGGCCGTCCTCG 111149 Query 134565 AGCTGTTTGCCTGCAAAAATCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGA 134624 ||||| ||||| || || |||| ||||||||| ||||| || || ||||| || || ||| Sbjct 111148 AGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGGAATTCCTTCCTTGTCCTGA 111089 Query 134625 ATTTTTTGTTTGACCGCGTCCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTA 134684 || || |||||| || | || ||| || ||||| ||||| || || || || Sbjct 111088 ATCTTGGATTTGACATTATCGATGGTATCGCTAGACTCCACCTCGAGGGTGATAGTCTTG 111029 Query 134685 CCGGTTAAAGTTTTAACGAAAATTTGCAT 134713 || || | || || |||||||| ||||| Sbjct 111028 CCCGTAAGGGTCTTTACGAAAATCTGCAT 111000 >seq3 Length=5105224 Score = 96.9 bits (106), Expect = 4e-15 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Minus Query 134524 CCTTTTGAATGTTGTAGTCGCCAACGGTGTGAGAGTCGTCGAGCTGTTTGCCTGCAAAAA 134583 |||| || ||||||||||| | ||| | || |||||||| || || || || | Sbjct 833604 CCTTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGA 833545 Query 134584 TCAAACGCTGCTGATCGGGCGGTATGCCTTCTTTTTCTTGAATTTTTTGTTTGACCGCGT 134643 ||| ||||||||| || || || || ||||| || || ||||| || ||||| || Sbjct 833544 TCAGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGT 833485 Query 134644 CCAATGTGTCGGACGATTCCACGTCGAGAGTAATGGTTTTACCGGTTAAAGTTTTAACGA 134703 | | |||||||| || ||||| ||||| || ||||| || || || | || ||||||| Sbjct 833484 CAATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGA 833425 Query 134704 A 134704 | Sbjct 833424 A 833424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 505398292602840