Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_028091.1 Length=196300 Score E Sequences producing significant alignments: (Bits) Value seq11 286 4e-72 seq1 91.5 2e-13 >seq11 Length=1431289 Score = 286 bits (316), Expect = 4e-72 Identities = 1018/1573 (65%), Gaps = 25/1573 (2%) Strand=Plus/Minus Query 110525 ATTTCCCAAACTGTGCGATAGAGATTCTTGATATCATCTGGGATATCTGAGATATTCTGG 110584 ||||||||||| || || | |||||||||| | || || | ||| |||||| Sbjct 453043 ATTTCCCAAACCGTCTTGTACAATGCCTTGATATCAGCAGGAATGCTGGGGATGTTCTGG 452984 Query 110585 ATGGAACCCCCCGCCTTCACCATGAGATCCTTCATATCCTTGGACCAGAGACCAATCTTC 110644 || ||||| || | | ||| | | |||||| | | ||||| ||||| || | Sbjct 452983 ATCGAACCACCTTCGGCAATAATGCGGTTCTTCATGTTGTCAGACCACAGACCCATGTCG 452924 Query 110645 TTGAGGTCATTGACGAGGTGCTTGTTGACAATGACAAACTCACCTGCGAGGGTTCTTCTC 110704 ||||| |||| || ||| |||| ||||| || |||||| | | | Sbjct 452923 ACAAGGTCCTTGAGTAGCCAAGGGTTAACAACCTGGAACTCTCCCGCGAGGACACGACGC 452864 Query 110705 AGGTAGATGTTTGTTGTGTATGGTTCAAAGCATTCATTATTACCCAAGATTTGTGCGGTG 110764 ||||||||| | ||||| || |||||||| ||||| |||||||||||||| | ||| Sbjct 452863 GAGTAGATGTTGGAGGTGTAAGGCTCAAAGCACTCATTGTTACCCAAGATTTGCGAAGTG 452804 Query 110765 GAGGCTGTTGGCATTGGTGCCATCAAAAGACTGTTACGAAGACCCTTCTCCTTGATGCGT 110824 |||||| ||||| || || | ||| | ||||||||| | ||| | || |||||| | Sbjct 452803 CTGGCTGTGGGCATGGGGGCGACCAACAAACTGTTACGGACACCGTGCTGCTTGATCTGC 452744 Query 110825 TCCTTGAGAACATCCCAGTCGTAGTTGA--GCTTGGTTTCACCTTCCCACATGTCAAACT 110882 | ||| ||| ||||||||| || || | | || || | | ||||||||||| | | Sbjct 452743 TGCTTTAGACTATCCCAGTCCCAG-AGATCGGTGGGCTTGA-CATCCCACATGTCGTATT 452686 Query 110883 GAAGCACCCCTTGGGACGCGGGAGAACCCTCAAAGGTTTCATAGGAACCTTGGGCTTCAG 110942 |||| | || ||||| | || || ||||| || | | |||| ||| | | | || Sbjct 452685 GAAGGATACCCTGGGAGACCGGGGAGCCCTCGTAGCTGGCGTAGGGACCGAGTTCCTTAG 452626 Query 110943 CCAATTCACAGCTCGCCTCCAGGGATGCGTGATACATGGTTTCAAAGATACGAGCATTCA 111002 | | || | |||| || || ||||| || ||||| || ||||| | || | Sbjct 452625 CGAGCTCCATGGACGCCGTCAAGGCGGCGTGGTAGATGGTCTCGAAGATTTGTTTGTTAA 452566 Query 111003 TCTCCTTGGCTTCATCTGAATCAAATGCGTAGCGGCACAAAATAAATACATCCGCGAGAC 111062 ||| || ||| || || |||| ||| ||| | || |||| || |||| Sbjct 452565 GTAACTTAGCCTCAGGCGATTCGAATGGGTATCGGAGAGCTAGGAAAGCATCGGCAAGAC 452506 Query 111063 CTTGAACACCCAAACCAATAGGTCTGTGTCGCATATTAGACTTTCGCGCAGTCTCA---A 111119 |||| |||||||| || || || | ||| ||||| || || | ||| || |||| | Sbjct 452505 CTTGGACACCCAATCCGATGGGACGGTGGCGCATGTT--GCTGTTGCG-AGCCTCAGGTA 452449 Query 111120 CGGGATAAAAATTTCTGTCAATGACTCGGTTTAGATTTTTGGTAACAATCTTTGTGATTT 111179 |||| || || ||||||| ||| |||||| || | || | | Sbjct 452448 CGGGGTAGTGGTTGACCTCAATGATCTTGTTCAGATTTCGCACGACCACCTGGACAACGT 452389 Query 111180 CATGAAGTTTTTCATAATCAAAAGTGCGAGTCTCTTCATTGACATACTTTGGAAGGGCGA 111239 | || | || | |||| | | || | | | | |||||| || | ||| | Sbjct 452388 CGTGCAACTTCTGGAAATCGTAGGCGCCCGCGTTGTAGTCCACATACGAAGGTAAGGCAA 452329 Query 111240 TTGATGCCAAATTGCAAACAGCCGTCTCATCCTTATCTGTGTACTCTAAAATTTCTGTAC 111299 || |||| ||||| ||||| |||||| | | | |||||| | ||| || || | Sbjct 452328 GGGAAGCCAGGTTGCACACAGCGACCTCATCAGGAGCCGAGTACTCAATAATCTCGGTGC 452269 Query 111300 ATAAGTTGGAACTCTTAATCGTCCCCAAATTCTTTTGGTTACTCTTCTTGTTGCACGCAT 111359 | | ||| ||||| ||| || |||| ||||| ||||| ||||| |||||| || Sbjct 452268 AGAGGTTAGAACTGCGAATAGTTCCCAGGTTCTTCTGGTTGCTCTTGCGGTTGCAGTGAT 452209 Query 111360 CCTTGTAGAGCATGTAGGGCGTCCCCGTCTCCGTCTGTGATTTGAGAATAGCCTTCCAAA 111419 ||||||| |||||| | || | || ||||| ||||| | | ||| || || | ||||| Sbjct 452208 CCTTGTAAAGCATGAATGGGTTACCAGTCTCAGTCTGAGCCTCGAGGATGGCATACCAAA 452149 Query 111420 -CATCGGCGGCTGGTAC-AATGGCGTTGGCCCGTCCCTCCGCCTCGTACTTTGTGTAGAG 111477 || | | || | | ||||| | | || ||||| || |||||||| ||| || Sbjct 452148 GTTTCTGGGCCTTGACCTTCTGGCG--GCCACGGCCCTCGGCTTCGTACTTCTCGTACAG 452091 Query 111478 GGCTTCAAACTCCTCACCCACCGCGTCGGAGAGACCTGGTGCCTTGTCTGGACAGAAAAG 111537 || || ||||| || || |||| | ||| || || || || ||||| | || Sbjct 452090 AGCCTCGAACTCATCGCCGTAGACGTCAGCGAGGCCAGGGCACTCGTTGGGACACATGAG 452031 Query 111538 AGACCATTGACCACCTTCCTCAACCCGCTTCATGAAAAGGTCTGGAATCCACAG-GGATG 111596 | ||||| ||| | |||||| |||||||||||||| || |||||||| || | | | Sbjct 452030 CGTCCATTCACCGTTCTTCTCAACACGCTTCATGAAAAGATCGGGAATCCAGAGAGCAAG 451971 Query 111597 AAAAGAGATCTCTACACCGAGCCTCTTCGTCACCTTGGTTGAGTCGTAACTCAAGGAACT 111656 ||| ||||| | | ||| | || || | || ||||| || | || | ||||| Sbjct 451970 GAAA-AGATCGCGAGCGCGAACTTCCTCCTTTCCGTGGTTCTTACGGAGATCCAAGAACT 451912 Query 111657 CCATGATATCCGCGTGCCATGGCTCAAGATAGACTGCGATAGATCC----CTTTCGACGC 111712 | | | ||||| |||||| ||||| || |||| || | | || || | | | Sbjct 451911 CGAAAACATCCGAGTGCCACGGCTCGAGGTAGATGGCAAAGGCACCAGGTCTCTTGTTG- 451853 Query 111713 CCAGCTTGATTTACATAGCGCGCTGTGGCGTTAAATACGCGAAGCATTGGAATAATACCA 111772 ||| | || | || || | || ||| ||| || || |||||||| || | |||||| Sbjct 451852 CCACCCTGGTCAACGTATCTGGCCGTGTTGTTGAAGACACGAAGCATAGGTACAATACCG 451793 Query 111773 TCTGATTGACCATTTGTCCCCCGAATACGAGATTTATTGGCTCTCACATCATGGATGTGC 111832 | || ||| || || || ||| |||| | | || | | || | || Sbjct 451792 TTAGAAGTACCGTTGGTACCGGCAATGTAAGATCCGGTAGATCGGATACGGTGAACGTTG 451733 Query 111833 ATCCCAATACCCCCAGCCCACTTTGAGATTTGCGCACACTCCGTAAGAGTTCCATAGATA 111892 | |||||||| || ||| ||| ||||| ||||| | | || || |||||||| Sbjct 451732 AGACCAATACCACCCGCCATCTTGGAGATCATAGCACAAGTCTTGAGGGTGTCATAGATA 451673 Query 111893 CCGTTGATTGAGTCCTCCTTGTTGGCGATAAGGAAGCAACTGGACATCTGCGGTCTTGGT 111952 || | || ||| ||||| || | | |||||| ||| ||| | ||| | || Sbjct 451672 CCCTCAATGCTGTCATCCTTCATGTCTACAAGGAAACAAGAGGAAAGCTGAGCCTGGGGG 451613 Query 111953 GTACCAGCATTGAAGAGGGTTGGTGTTGCGTGAATGAACATACCTTG--GGACATCTTGT 112010 ||||| || ||||| ||||| || | ||||| |||| ||| ||| |||||| | Sbjct 451612 GTACCGGCGTTGAAAAGGGTGGGGGAGGCGTGGGTGAA-ATA-TTTGCTGGACATGAGAT 451555 Query 112011 CGTATGTCTCCAAGACAGAATCAATGTCTTCCCCGTGGATGCCGATTGCGACCCGCATGA 112070 ||||||||| | ||| |||| ||| || || ||| |||| || || ||||||| Sbjct 451554 TGTATGTCTCAATGACCTTTTCAACGTCGTCACCCCAGATACCGACGGCAACACGCATGA 451495 Query 112071 ACATGTACTGTGG 112083 ||||| ||| || Sbjct 451494 TCATGTGCTGCGG 451482 >seq1 Length=7732581 Score = 91.5 bits (100), Expect = 2e-13 Identities = 159/228 (70%), Gaps = 4/228 (2%) Strand=Plus/Plus Query 11629 CGCATCAATCTCATCAATGAAGACAATACATGGTTGATTTTCGCGGGCGATTTCAAAGAG 11688 |||||| || ||||| ||||||| || || || ||| | ||| || | ||| || Sbjct 3348043 CGCATCGATTTCATCGATGAAGATGATGCAAGGCGCATTCTTGCGCGCCGTCGAAAAAAG 3348102 Query 11689 ATCGCGAACCCTTTTGGCACCCACACCAACAAACATCTCCACAAAGTTTG--CGGCAGAG 11746 ||| || || || || |||||||| ||||||||||| || || | | | || | Sbjct 3348103 ATCACGGACTCTCGAAGCTCCCACACCGACAAACATCTCGACGAATTCCGAACCGCTTA- 3348161 Query 11747 CACTGGATGAATGGGACATTTGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTTCCC 11806 ||||| | || || || || || || ||| ||||| ||| || || ||||| ||| Sbjct 3348162 CACTGAAA-AACGGCACGCCAGACTCGCCGGCGGTGGCTTTGGCCAGTAGCGTCTTACCC 3348220 Query 11807 GTACCTGGCTTACCCGCGAGAAGGGCGCCTCGGGGGATCTTGGCACCA 11854 || || || ||| ||||| | || ||||| ||||||||||||||| Sbjct 3348221 GTTCCGGGAGGACCGGCGAGGATAGCACCTCGTGGGATCTTGGCACCA 3348268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 628031866543200