Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_028092.1 Length=193301 Score E Sequences producing significant alignments: (Bits) Value seq11 233 2e-56 seq1 87.8 2e-12 >seq11 Length=1431289 Score = 233 bits (258), Expect = 2e-56 Identities = 1073/1683 (64%), Gaps = 43/1683 (3%) Strand=Plus/Minus Query 117805 TGAACTGAATGGGTCTCGCCTTGGC--CTTTGAT-CGGAGGTAGTACATCCCCGTCTTGA 117861 ||||||| ||||| || | | ||| ||| | | ||||| |||||||| |||||||||| Sbjct 453237 TGAACTGGATGGG-CTGGGC--GGCAGCTTGGGTACGGAGATAGTACATTCCCGTCTTGA 453181 Query 117862 GCCCCTGCTTCCAGGCATACATATGCATTGAGGACAACTTGG----AGAGGGTTGGACTT 117917 | || ||||||| | | ||||| | | |||| || ||||| || Sbjct 453180 GACCGAGCTTCCAACCCGTGAAGTGCATGCTCGTGATCTTGCCCATAGTGGGTT---CTC 453124 Query 117918 TCCATGAAGAGGTTCATACTTTGGGATTGATCGATGAAGCGTCCCCGATCCGCCGCCATA 117977 || ||| | ||| | | ||||| ||||||||||| || || || || ||||| Sbjct 453123 TC-ATGTGAATGTTAAGAGACTGGGACTGATCGATGAACGCACCACGGTCGGCAGCCATC 453065 Query 117978 TCAATCACATCCTTCATCTT---GATTTCCCACACAGTCCTGTAGAGGTTCTTAATATCA 118034 | | || | | || ||||||||| || ||| |||| | ||| |||||| Sbjct 453064 TGGA---CAACGGTACGCTGAGAGATTTCCCAAACCGTCTTGTACAATGCCTTGATATCA 453008 Query 118035 TCTGGGATATCCACGATATTTTGGATGGATCCACCCGCCTTGACCATGAGATCCTTCATA 118094 | || || ||| || ||||| || ||||| | | ||| | | |||||| Sbjct 453007 GCAGGAATGCTGGGGATGTTCTGGATCGAACCACCTTCGGCAATAATGCGGTTCTTCATG 452948 Query 118095 TCCTTTGACCAGAGACCAATCTTTTTGAGATCCTCCACGAG---ATGCTTATTGACAACA 118151 | | ||||| ||||| || | || |||| | || | | ||| ||||| Sbjct 452947 TTGTCAGACCACAGACCCATGTCGACAAGGTCCTTGAGTAGCCAAGGGTTA---ACAACC 452891 Query 118152 ACAAACTCACCCGCGAGGGTGCGTCTCAGATAGATATTGGTCGTGTATGGCTCAAAGCAC 118211 ||||| ||||||||| || | | ||||| |||| ||||| |||||||||||| Sbjct 452890 TGGAACTCTCCCGCGAGGACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCAAAGCAC 452831 Query 118212 TCATTGTTACCCAAGATTTGGGCTGTGGAGGCTGTGGGCATGGGTGCCATGAGAAGGCTG 118271 |||||||||||||||||||| | ||| ||||||||||||||| || | | | ||| Sbjct 452830 TCATTGTTACCCAAGATTTGCGAAGTGCTGGCTGTGGGCATGGGGGCGACCAACAAACTG 452771 Query 118272 TTACGGAGACCCTTTTCCCTAATGCGTTCCTTGAGAGCGTCCCAGTCGTAGTTGAGC-TT 118330 ||||||| ||| | | | | || | | ||| ||| |||||||| || || | | Sbjct 452770 TTACGGACACCGTGCTGCTTGATCTGCTGCTTTAGACTATCCCAGTCCCAG-AGATCGGT 452712 Query 118331 TGTCTCCCCCTGCCACATATCAAACTGGAGGATACCTTGGGACGCTGGCGATCCCTCAAA 118390 | || | | |||||| || | || |||||||| ||||| | || || ||||| | Sbjct 452711 GGGCTTGACATCCCACATGTCGTATTGAAGGATACCCTGGGAGACCGGGGAGCCCTCGTA 452652 Query 118391 TGTCTCATATGGGCCCTCAACCTCCGCCAATTCGGAGCTCGCCTCGAGGGCTGCGTGATA 118450 | | || || || ||| || | || | |||| | ||| ||||| || Sbjct 452651 GCTGGCGTAGGGACCGAGTTCCTTAGCGAGCTCCATGGACGCCGTCAAGGCGGCGTGGTA 452592 Query 118451 CATTGTTTCAAAAATGCGAGCATTCATTGCCTTGGCCTCGTCGGAATCAAACGCGAGTCG 118510 || || || || || | || | | ||| ||||| || || || | | ||| Sbjct 452591 GATGGTCTCGAAGATTTGTTTGTTAAGTAACTTAGCCTCAGGCGATTCGAATGGGTATCG 452532 Query 118511 GCACAAAATAAATACATCCGCGAGACCTTGGACACCGAGGCCAATTGGGCGATGTCTCAT 118570 | | || |||| || |||||||||||||| | || || || || || | ||| Sbjct 452531 GAGAGCTAGGAAAGCATCGGCAAGACCTTGGACACCCAATCCGATGGGACGGTGGCGCAT 452472 Query 118571 ATTAGACTTCCGAGCGGTCTC---CACGGGATAAAAATTCCTATCGATAACCCTATTTAG 118627 || || ||||| ||| ||||| || || || || | | | || || Sbjct 452471 GTTGCTGTTGCGAGC---CTCAGGTACGGGGTAGTGGTTGACCTCAATGATCTTGTTCAG 452415 Query 118628 ATTTTTGGTGACAACCTTTGTGATTTCATGAAGCTTTTCGTAATCAAAACTGCGAGTCTC 118687 |||| ||| |||| | || || | ||| | | |||| | || | | Sbjct 452414 ATTTCGCACGACCACCTGGACAACGTCGTGCAACTTCTGGAAATCGTAGGCGCCCGCGTT 452355 Query 118688 TTCATTGACATACTTAGGAAGGGCGATTGACGCCAGATTACACACAGAGGTCTCATCCTT 118747 | | |||||| ||| | ||| | || ||||| || ||||||| | |||||| Sbjct 452354 GTAGTCCACATACGAAGGTAAGGCAAGGGAAGCCAGGTTGCACACAGCGACCTCATCAGG 452295 Query 118748 ATCAGTGTACTCTATAATTTCCGTGCACAAGTTTGAACTCTTAATGGTGCCCAAGTTCTT 118807 | | | |||||| ||||| || ||||| | ||| ||||| ||| || |||| |||||| Sbjct 452294 AGCCGAGTACTCAATAATCTCGGTGCAGAGGTTAGAACTGCGAATAGTTCCCAGGTTCTT 452235 Query 118808 TTGATTTGACTTTGTGTTACACGCATCCTTGTAAAGCATGTATGGCGTCCCCGTCTCCGT 118867 || || ||| ||| || |||||||||||||||| |||| | || ||||| || Sbjct 452234 CTGGTTGCTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAATGGGTTACCAGTCTCAGT 452175 Query 118868 TTGGGACTTGAGAATAGCCTTCCAGACAT--CGGCAGCTGGCACAGTGGCGTTGGCTCGC 118925 || | || ||| || || | ||| | | || || | ||||| | | || Sbjct 452174 CTGAGCCTCGAGGATGGCATACCAAAGTTTCTGGGCCTTGACCTTCTGGCG--GCCACGG 452117 Query 118926 CCCTCTTCCTCGTACTTTGTGTAGAGGGCTTCAAACTCTTCACCCACGGCCTCTGAGAGC 118985 ||||| | |||||||| ||| || || || ||||| || || | | || | ||| Sbjct 452116 CCCTCGGCTTCGTACTTCTCGTACAGAGCCTCGAACTCATCGCCGTAGACGTCAGCGAGG 452057 Query 118986 CCTGGTGCCTTATCTGGGCAGAAGAGAGACCATTGACCACCCTCCTCAACCCGCTTCATG 119045 || || || | || || | ||| | ||||| ||| || |||||| ||||||||| Sbjct 452056 CCAGGGCACTCGTTGGGACACATGAGCGTCCATTCACCGTTCTTCTCAACACGCTTCATG 451997 Query 119046 AAGAGGTCTGGGATCCAGAGCGCCGAGAAGAGATCCCGACAGCGAGCTTCTTCATCCCCC 119105 || || || || |||||||| || ||| ||||| ||| |||| |||| || | || Sbjct 451996 AAAAGATCGGGAATCCAGAGAGCAAGGAAAAGATCGCGAGCGCGAACTTCCTCCTTTCCG 451937 Query 119106 TGATTGAGACGCAACTCCAAAAAGTCCATGATATCCGCGTGCCACGGTTCCAGGTACACC 119165 || || ||| | ||||| || || | | ||||| ||||||||| || ||||| | Sbjct 451936 TGGTTCTTACGGAGATCCAAGAACTCGAAAACATCCGAGTGCCACGGCTCGAGGTAGATG 451877 Query 119166 GCGATTG-ACC---CCTTACGACGACCAGCCTGGTTTACATACCTCGCAGTGGCGTTAAA 119221 || | | ||| || | | ||| |||||| || || || || ||| ||| || Sbjct 451876 GCAAAGGCACCAGGTCTCTTGTTG-CCACCCTGGTCAACGTATCTGGCCGTGTTGTTGAA 451818 Query 119222 TACACGAAGCATTGGAATGATACCATCGGATTGGCCATTTGTCCCCCGAATACGAGACTT 119281 ||||||||||| || | ||||| | || || || || || ||| ||| Sbjct 451817 GACACGAAGCATAGGTACAATACCGTTAGAAGTACCGTTGGTACCGGCAATGTAAGATCC 451758 Query 119282 ATTGGCTCTGACATCGTGGATGTGCATACCAATACCCCCTGCCCACTTTGAGATTTGCGC 119341 | | || || | ||| | || | ||||||||| || ||| ||| ||||| || Sbjct 451757 GGTAGATCGGATACGGTGAACGTTGAGACCAATACCACCCGCCATCTTGGAGATCATAGC 451698 Query 119342 GCACTCCGTGAGACTGCCGTAGATCCCATCGATCGAGTCACCCTTATTTGCGATGAGGAA 119401 || | |||| || | ||||| || || || |||| |||| | | | ||||| Sbjct 451697 ACAAGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCTACAAGGAA 451638 Query 119402 GCAGCTCGACATTTGAGGCCTGGGTGTACCAGCGTTGAAGAGAGTTGGTGTCGCGTGGAT 119461 || || | |||| | ||| ||||| |||||||| || || || | |||||| | Sbjct 451637 ACAAGAGGAAAGCTGAGCCTGGGGGGTACCGGCGTTGAAAAGGGTGGGGGAGGCGTGGGT 451578 Query 119462 GAA 119464 ||| Sbjct 451577 GAA 451575 Score = 100 bits (110), Expect = 4e-16 Identities = 293/448 (65%), Gaps = 4/448 (1%) Strand=Plus/Plus Query 129728 TAGTCCCCAACCCGCTTCTCGAAGAAGTTTGTCTTCCCGTCCAAGCTGATATTCTCCATA 129787 || || || || ||||||||||||||||| ||||| ||| | | ||| ||||||||| Sbjct 758278 TACTCGCCGACGCGCTTCTCGAAGAAGTTGGTCTTGCCGCCGAGAGAGATGTTCTCCATA 758337 Query 129788 AAATCAAATGGGTTCTTTGA--GTTCCAAATTGCTGGCACTCCAATCTGTTTGAGGAGAC 129845 || || || ||||| || | | | || || | | | | |||||| | Sbjct 758338 AAGTCGAACGGGTTGGCGGACCGGTAGACCTT-CTCGTTGCCGAGGGCGAC-GAGGAGGC 758395 Query 129846 GATCCGAGACGTACTCAATGTACTCAGACATCTTCTCGGAGTTCATACCGATGAGGTTAC 129905 | || | |||| |||| ||||||| ||| | |||||||| |||| |||| | Sbjct 758396 GGTCGGCGACGAACTCGATGTACTGCTTCATGAGGTTCGAGTTCATGCCGAGGAGGGCGC 758455 Query 129906 ATGGGAGCGCGTCCAAGATGAACCCCTTCTCAATGTCCACAGCTTCCCGCACGATGGCGT 129965 | || || || || | |||| ||| ||| || | || || ||| | ||| | | Sbjct 758456 AAGGCAGGGCCTCGGTCAGGAACTCCTGCTCGATCTTGACGGCGTCCATGATGATCTCCT 758515 Query 129966 GAATGGTCTCCGTGCCAGGTCTATTGCGCAAAGTCTTGAAGAGTTCCACGGCAAACTCCT 130025 |||| ||| | ||| || | ||| | ||| || ||| || || Sbjct 758516 GAATCATCTGCTTGCTGGGGCGGTTGTTGAGGTGGGAGAACAGCAGGCAGGCGAAGTCGG 758575 Query 130026 GGTGGAGACCCTCGTCACGGGAGATGAGTTCATTCGAGAAGCACAGACCTGGCATGAGAC 130085 ||||||||||||||| ||||||||||| || || |||||| || || |||||||||| Sbjct 758576 TGTGGAGACCCTCGTCGCGGGAGATGAGCTCGTTGGAGAAGGTCAAGCCGGGCATGAGAC 758635 Query 130086 CCCGCTTCTTCAACCAGAAAATCGCACAAAATGAGCCAGAGAAGAAGATCCCCTCCACAC 130145 | |||||||| | |||||| || | || | || ||||||||| ||||| || Sbjct 758636 CGCGCTTCTTGAGCCAGAAGATGGAGGCGAAGGCACCGCTGAAGAAGATACCCTCGACGG 758695 Query 130146 ACGCGAACGCAAAGAGACGCTCAGCAAA 130173 ||||| || | | ||||| ||| || Sbjct 758696 CGGCGAAGGCGATCAAACGCTGAGCGAA 758723 >seq1 Length=7732581 Score = 87.8 bits (96), Expect = 2e-12 Identities = 159/228 (70%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 14243 GCGTCAATTTCATCGATGAAAACGATACATGGTTGATTTTCACGGGCAACTTC--AAAGA 14300 || || |||||||||||||| | ||| || || ||| | || || | || ||| | Sbjct 3348044 GCATCGATTTCATCGATGAAGATGATGCAAGGCGCATTCTTGCGCGC--CGTCGAAAAAA 3348101 Query 14301 TATCTCGCACTCTCTTGGCACCGACACCCACAAACATCTCCACAAAATTGGCGGCG-GAA 14359 ||| || |||||| || || ||||| ||||||||||| || || | | || | Sbjct 3348102 GATCACGGACTCTCGAAGCTCCCACACCGACAAACATCTCGACGAATTCCGAACCGCTTA 3348161 Query 14360 CATTGGATGAAGGGGACGTTAGATTCACCCGCGATGGCTCGGGCGAGGAGGGTCTTCCCC 14419 || | || || || ||| ||| || || ||| ||||| ||| || || ||||| ||| Sbjct 3348162 CACT-GAAAAACGGCACGCCAGACTCGCCGGCGGTGGCTTTGGCCAGTAGCGTCTTACCC 3348220 Query 14420 GTCCCTGGTTTCCCTGCGAGAAGGGCACCACGTGGGATCCTGGCACCA 14467 || || || || ||||| | ||||| ||||||||| |||||||| Sbjct 3348221 GTTCCGGGAGGACCGGCGAGGATAGCACCTCGTGGGATCTTGGCACCA 3348268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 618435068582520