Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_028093.1 Length=182309 Score E Sequences producing significant alignments: (Bits) Value seq11 279 6e-70 seq1 102 1e-16 >seq11 Length=1431289 Score = 279 bits (308), Expect = 6e-70 Identities = 1121/1742 (64%), Gaps = 39/1742 (2%) Strand=Plus/Plus Query 104222 CCACAGTACATGTTCATGCGCGTGGCCATCGGTATTCATGGGGAAGACATTGATTCTGTC 104281 || ||| ||||| ||||||| || ||| ||||||| || || ||| |||| ||| Sbjct 451482 CCGCAGCACATGATCATGCGTGTTGCCGTCGGTATCTGGGGTGACGACGTTGAAAAGGTC 451541 Query 104282 TTGGAGACATACGACAAGATGTCC--CAAGGTATGTTCATTCACGCAACACCAACCCTCT 104339 | ||||||||| | |||||| ||| ||| |||| ||||| | || ||||| | Sbjct 451542 ATTGAGACATACAATCTCATGTCCAGCAAA-TAT-TTCACCCACGCCTCCCCCACCCTTT 451599 Query 104340 TCAATGCTGGTACACCAAGACCCCAAATGTCCAGTTGCTTCCTTATCGCCAACAAGGAGG 104399 |||| || ||||| || | || | ||| ||| |||||| | | || ||||| | Sbjct 451600 TCAACGCCGGTACCCCCCAGGCTCAGCTTTCCTCTTGTTTCCTTGTAGACATGAAGGATG 451659 Query 104400 ACTCAATCAACGGTATCTATGGAACTCTTACGGAGTGTGCGCAAATCTCAAAGTGGGCTG 104459 || || | |||||||||| || || | | ||||| ||||| ||| ||| | Sbjct 451660 ACAGCATTGAGGGTATCTATGACACCCTCAAGACTTGTGCTATGATCTCCAAGATGGCGG 451719 Query 104460 GGGGTATTGGGATGCACATCCATGATGTGAGAGCCAATAAATCTCGTATTCGGGGGACAA 104519 | |||||||| | || | || | | || | | |||| ||| || || | Sbjct 451720 GTGGTATTGGTCTCAACGTTCACCGTATCCGATCTACCGGATCTTACATTGCCGGTACCA 451779 Query 104520 ATGGTCAATCAGATGGTATTATTCCAATGCTTCGCGTATTTAACGCCACAGCGCGCTATG 104579 | ||| || | |||||| | || |||||||| || || ||| ||| || | || | Sbjct 451780 ACGGTACTTCTAACGGTATTGTACCTATGCTTCGTGTCTTCAACAACACGGCCAGATACG 451839 Query 104580 TAAATCAAGCTGGGCGTCGAAAG----GGATCTATCGCAGTCTATCTTGAGCCATGGCAC 104635 | | || | ||| | | | || || | | || |||| || ||||| |||||| Sbjct 451840 TTGACCAGGGTGG-CAACAAGAGACCTGGTGCCTTTGCCATCTACCTCGAGCCGTGGCAC 451898 Query 104636 GCGGATATCATGGAGTTCCTTGAGTTGCGTCTCAACCAAGGTGACGAGGAGG--CGCGGT 104693 ||||| | | |||||| | || | ||| ||||| || | ||||| | |||| | Sbjct 451899 TCGGATGTTTTCGAGTTCTTGGATCTCCGTAAGAACCACGGAAAGGAGGAAGTTCGCGCT 451958 Query 104694 GCCGCGATCTCTTCTCCGCTCTCTGGATTCCAGATCTCTTCATGAAGAGAGTTGAGGAGA 104753 |||||||| ||| |||||||||||||| ||||| ||||||||| | |||||| ||| Sbjct 451959 --CGCGATCTTTTCCTTGCTCTCTGGATTCCCGATCTTTTCATGAAGCGTGTTGAGAAGA 452016 Query 104754 GTGGCAATTGGTCTCTCTTTTGTCCAGACAAGGCACCTGGTCTCTCCGATGCCGTGGGTG 104813 || | ||| | ||| | ||||| || || ||||| ||| | || | | || | Sbjct 452017 ACGGTGAATGGACGCTCATGTGTCCCAACGAGTGCCCTGGCCTCGCTGACGTCTACGGCG 452076 Query 104814 AGGAGTTTGAAGCCCTTTACACAAAGTACGAGGAAGAAGGTCGGGCGACTGC-GACGGTG 104872 | ||||| || || || ||| |||||||| | || || || | | | | || ||| Sbjct 452077 ATGAGTTCGAGGCTCTGTACGAGAAGTACGAAGCCGAGGGCCGTG-GCCGCCAGAAGGT- 452134 Query 104873 CCAGCTGCCGATG-TGTGGAAAGCTATTCTCAAGTCTCAAACCGAGACTGGTACACCATA 104931 | || | || | ||| | || || ||| || |||| || |||||||||| |||| Sbjct 452135 CAAGGCCCAGAAACTTTGGTATGCCATCCTCGAGGCTCAGACTGAGACTGGTAACCCATT 452194 Query 104932 CATGCTTTACAAAGACGCCTGTAACCAAAAGAGTAATCAAAAGAATTTGGGTGTGATCAA 104991 |||||||||||| || ||| |||| ||||| || || ||||| |||| || Sbjct 452195 CATGCTTTACAAGGATCACTGCAACCGCAAGAGCAACCAGAAGAACCTGGGAACTATTCG 452254 Query 104992 GAGTTCCAATCTCTGTACAGAAATCTTGGAATTTACAGACAAAGATGAGACGGCTGTGTG 105051 ||||| || ||||| || || || | || | | | |||||| |||||||| Sbjct 452255 CAGTTCTAACCTCTGCACCGAGATTATTGAGTACTCGGCTCCTGATGAGGTCGCTGTGTG 452314 Query 105052 TAACCTCGCATCAATCGCTCTCCCCAAGTATGTGGA-TCCAGAGACAAAGACATTTGATT 105110 ||||| || || | || | || ||||||||| | || | | | | |||| Sbjct 452315 CAACCTGGCTTCCCTTGCCTTACCTTCGTATGTGGACTACAACGCGGGCGCC-TACGATT 452373 Query 105111 ATGAAAAACTCCACGAAGTTACGAAAACTGTCACCAAAAACCTAAACAGAGTTATTGATA 105170 | || | ||||| ||| | ||| ||| || |||| | ||||| Sbjct 452374 TCCAGAAGTTGCACGACGTTGTCCAGGTGGTCGTGCGAAATCTGAACAAGATCATTGAGG 452433 Query 105171 GAAATTTTTACCCCGT---TGAGACTGCTCGTAAATCTAATATGAGACACCGTCCAATTG 105227 || |||||||| |||| ||||| || || ||| | |||||||| || | Sbjct 452434 TCAACCACTACCCCGTACCTGAG---GCTCGCAACAGCAACATGCGCCACCGTCCCATCG 452490 Query 105228 GTCTCGGTGTTCAGGGTCTCGCGGATGTATTCATTCTTTGTCGCCACGCATTTGATTCCG 105287 | | ||||| || ||||| || |||| ||| | | || || |||| || || Sbjct 452491 GATTGGGTGTCCAAGGTCTTGCCGATGCTTTCCTAGCTCTCCGATACCCATTCGAATCGC 452550 Query 105288 ACGAAGCGAAGGAAATCAATGCGCGCATATTTGAGACCATGTATCACGCCGCTCTTGAGG 105347 || || ||| | | || | || || |||||||| || |||||||| ||||| | Sbjct 452551 CTGAGGCTAAGTTACTTAACAAACAAATCTTCGAGACCATCTACCACGCCGC-CTTGACG 452609 Query 105348 CGAGTTCA--GAGTTGGCAGAGGTTGATGGTCCATATGAAACCTTTGAGGGTTCTCCAGC 105405 | || || ||| | || ||| ||||| || | | || ||||| || || | Sbjct 452610 -GCGTCCATGGAGCTCGCTAAGGAACTCGGTCCCTACGCCAGCTACGAGGGCTCCCCGGT 452668 Query 105406 TTCACAAGGGGTGCTTCAATTTGATATGTGGGAAGGTGAGACCAAGCTTCACTACGACTG 105465 || || || | ||||||| || |||||||| | || ||| || || ||||| Sbjct 452669 CTCCCAGGGTATCCTTCAATACGACATGTGGGATGTCAAGCCCACCGATCTCTGGGACTG 452728 Query 105466 GGAAGCTCTCAAGGAACGCATCAAGGAGAAGGGTCTTCGTAACAGTCTCCTCATGGCTCC 105525 ||| ||| ||| | | |||||| || | ||| | ||||||||| | | | || || Sbjct 452729 GGATAGTCTAAAGCAGCAGATCAAGCAGCACGGTGTCCGTAACAGTTTGTTGGTCGCCCC 452788 Query 105526 AATGCCAACAGCCTCCACCGCACAAATCTTGGGTAATAATGAATGCTTTGAACCCTACAC 105585 ||||| |||||| ||| | |||||||||||||| ||||| |||||||| || ||||| Sbjct 452789 CATGCCCACAGCCAGCACTTCGCAAATCTTGGGTAACAATGAGTGCTTTGAGCCTTACAC 452848 Query 105586 GACGAACATCTATCTGAGAAGAACCCTCGCGGGAGAGTTTGTGATTGTCAACAAGCATCT 105645 | |||||||| | | | ||||||||||||||| | |||| ||| || Sbjct 452849 CTCCAACATCTACTCGCGTCGTGTCCTCGCGGGAGAGTTCCAGGTTGTTAACCCTTGGCT 452908 Query 105646 CGTGGATGACCTCAAAGAGATTGGTCTCTGGTCCAAGGATATGAAGGATCTCATGGTGAA 105705 | | ||||| || || ||||| ||||| | | |||||| | | ||| | Sbjct 452909 ACTCAAGGACCTTGTCGACATGGGTCTGTGGTCTGACAACATGAAGAACCGCATTATTGC 452968 Query 105706 AGCGGGTGGTTCCATTCAAAATATTGTGGATATTCCAAATGAAATTAAGAAGTTGTACCG 105765 | |||||||| || || || || ||||| ||| || ||| |||||| Sbjct 452969 CGAAGGTGGTTCGATCCAGAACATCCCCAGCATTCCTGCTGATATCAAGGCATTGTACAA 453028 Query 105766 CACAGTTTGGGAAATC---AAGATGAAGGATGTCATTGACATGGCCGCAGATCGTGGTCG 105822 || |||||||||||| || | | |||| | ||||| || || |||||| Sbjct 453029 GACGGTTTGGGAAATCTCTCAGCGTACCGTTGTC---CAGATGGCTGCCGACCGTGGTGC 453085 Query 105823 CTTCATTGATCAAAGTCAAAG--TATGAATCTCTTCATGGAAAGTCCAACGATGTCCAAG 105880 ||||| |||| |||| || | | || | |||| | || || ||| |||| Sbjct 453086 GTTCATCGATC--AGTCCCAGTCTCTTAACATTCACATGAGAGAACCCACTATGGGCAAG 453143 Query 105881 CTCTCTTCTATGCACATGTACAGTTGGAAGAAGGGTCTCAAAACGGGGATGTATTACCTC 105940 || | |||||| | |||||||| |||||||| ||||| ||||| || ||| Sbjct 453144 ATCACGAGCATGCACTTCACGGGTTGGAAGCTCGGTCTCAAGACGGGAATGTACTATCTC 453203 Query 105941 CG 105942 || Sbjct 453204 CG 453205 Score = 107 bits (118), Expect = 2e-18 Identities = 94/117 (80%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 94828 GTTGAGGGTATCTTCTTCTCTGGTTCCTTCTGCGCTATTTATTGGCTCAAGAAGCGAGGT 94887 || ||||||||||||||| ||| ||||| | | || | |||||||||||||| ||| Sbjct 758693 GTCGAGGGTATCTTCTTCAGCGGTGCCTTCGCCTCCATCTTCTGGCTCAAGAAGCGCGGT 758634 Query 94888 CTCATGCCAGGTCTCTGCTTCTCCAACGAGCTTATCTCTCGTGACGAGGGACTCCAC 94944 |||||||| || | ||||||||||||||| ||||| || |||||||| |||||| Sbjct 758633 CTCATGCCCGGCTTGACCTTCTCCAACGAGCTCATCTCCCGCGACGAGGGTCTCCAC 758577 >seq1 Length=7732581 Score = 102 bits (112), Expect = 1e-16 Identities = 162/228 (71%), Gaps = 6/228 (3%) Strand=Plus/Plus Query 9704 GCATCAATCTCATCAATGAAGACGATGCATGGTTGATTTTCGCGAGCGACTTC--AAAGA 9761 ||||| || ||||| ||||||| |||||| || ||| | ||| || | || ||| | Sbjct 3348044 GCATCGATTTCATCGATGAAGATGATGCAAGGCGCATTCTTGCGCGC--CGTCGAAAAAA 3348101 Query 9762 GATCCCGTACACGCTTGGCGCCCACACCAACAAACATCTCCACAAAGTTTGCGGCGGA-A 9820 |||| || || | | || |||||||| ||||||||||| || || | | || | Sbjct 3348102 GATCACGGACTCTCGAAGCTCCCACACCGACAAACATCTCGACGAATTCCGAACCGCTTA 3348161 Query 9821 CATTGGATGAAGGGGACATTAGATTCACCCGCAATGGCTCGGGCGAGAAGAGTCTTACCC 9880 || || | || || || ||| || || || ||||| ||| || || ||||||||| Sbjct 3348162 CACTGAAA-AACGGCACGCCAGACTCGCCGGCGGTGGCTTTGGCCAGTAGCGTCTTACCC 3348220 Query 9881 GTACCTGGCTTACCCGCGAGGAGGGCACCTCGTGGAATCTTGGCGCCA 9928 || || || ||| ||||||| ||||||||||| |||||||| ||| Sbjct 3348221 GTTCCGGGAGGACCGGCGAGGATAGCACCTCGTGGGATCTTGGCACCA 3348268 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 583260676057080