Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_028094.1 Length=473558 Score E Sequences producing significant alignments: (Bits) Value seq6 145 2e-29 seq15 136 1e-26 seq5 109 2e-18 seq12 107 6e-18 seq3 107 6e-18 >seq6 Length=3640113 Score = 145 bits (160), Expect = 2e-29 Identities = 173/235 (74%), Gaps = 0/235 (0%) Strand=Plus/Plus Query 140503 TTTACATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTAT 140562 ||| |||||||||||| | | || || | ||||| || || ||||| ||||| |||| Sbjct 611833 TTTGCATACCACCACGGAGACGGAGGACCAAGTGAAGGGTGGATTCTTTCTGAATGTTAT 611892 Query 140563 AATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGAT 140622 | || || || ||||| |||||||| | || |||||||| ||||| ||||||||||| | Sbjct 611893 AGTCGGACAAAGTTCGTCCATCTTCCAACTGCTTTCCAGCGAAGATGAGACGTTGCTGGT 611952 Query 140623 CAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATG 140682 |||| || || || || || || ||||| || | || || || || || | ||| || | Sbjct 611953 CAGGTGGGATACCCTCCTTGTCTTGAATCTTCGACTTGACGTTGTCGATAGTATCGGAAG 612012 Query 140683 GTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 ||| || || || |||| ||||| || || | || || || || |||||||| Sbjct 612013 ATTCGACCTCGAGAGTAATCGTCTTACCCGTCAAGGTCTTGACGAAGATCTGCAT 612067 Score = 129 bits (142), Expect = 2e-24 Identities = 167/228 (73%), Gaps = 2/228 (1%) Strand=Plus/Plus Query 140511 CCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGAT 140570 |||||||| | | ||||| | |||||||| ||||| || || || || || || Sbjct 611613 CCACCACGGAGACGAAGAACCAAGTGAAGAGTCGACTCCTTCTGGATGTTGTAGTCGCTC 611672 Query 140571 AATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGGA 140630 || ||||| ||||| || | || || || || ||||| ||||||||||| ||||| || Sbjct 611673 AAAGTTCGGCCATCCTCCAACTGCTTACCGGCGAAGATAAGACGTTGCTGGTCAGGCGGG 611732 Query 140631 ATTCCTTCTTTATCCTGAATTTTAGCT-TTTACATTATCAATCGAATCAGATGGTTCAAC 140689 || || || || ||||| || || ||| || || || ||||| | ||| || | ||| || Sbjct 611733 ATACCCTCCTTGTCCTGGATCTT-GCTCTTCACGTTGTCAATGGTATCCGAAGATTCCAC 611791 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| | ||||||||||| || || || ||||| || ||||| Sbjct 611792 CTCGAGTGTGATGGTCTTTCCGGTGAGGGTCTTGACAAAGATTTGCAT 611839 Score = 120 bits (132), Expect = 9e-22 Identities = 158/219 (72%), Gaps = 0/219 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 |||||||||||| | | || ||||| || ||||| ||||| || ||||| || || || Sbjct 612065 CATACCACCACGAAGACGAAGGACAAGGTGGAGAGTGGACTCCTTCTGAATGTTGTAGTC 612124 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || ||||| || || || || ||||||||||| | || ||||| || || Sbjct 612125 CGAAAGGGTACGGCCATCCTCGAGCTGCTTACCAGCAAAGATCAATCGCTGCTGGTCGGG 612184 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 ||| || || || |||||||| || || | || || || ||||| | || || | || Sbjct 612185 AGGGATGCCCTCCTTATCCTGGATCTTCGACTTGACGTTGTCAATGGTGTCGGAAGACTC 612244 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTAC 140725 || ||||| || | ||||| ||||| || || || || Sbjct 612245 GACCTCAAGGGTGATGGTCTTGCCGGTAAGGGTCTTGAC 612283 Score = 114 bits (126), Expect = 4e-20 Identities = 164/231 (71%), Gaps = 0/231 (0%) Strand=Plus/Plus Query 140507 CATACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATC 140566 ||| |||||||| | | || || | || || |||||||| || || || || || || Sbjct 612372 CATTCCACCACGGAGACGGAGGACCAAGTGGAGGGTAGACTCCTTCTGGATGTTGTAGTC 612431 Query 140567 AGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGG 140626 || | || || || || || ||||| || ||||| || || | || ||||| ||||| Sbjct 612432 GGAGAGAGTGCGACCGTCCTCGAGTTGCTTACCAGCGAAAATCAATCGCTGCTGGTCAGG 612491 Query 140627 AGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTC 140686 |||||| ||||| || ||||| || || | || || || || || | || || | || Sbjct 612492 AGGAATACCTTCCTTGTCCTGGATCTTCGACTTAACGTTGTCGATAGTGTCGGAAGACTC 612551 Query 140687 AACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || ||||| || | ||||| ||||| || || || || ||||||||||| Sbjct 612552 GACCTCAAGAGTGATGGTCTTGCCGGTAAGGGTCTTAACGAAAATCTGCAT 612602 >seq15 Length=310649 Score = 136 bits (150), Expect = 1e-26 Identities = 167/228 (73%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 140510 ACCACCACGTAATCTTAGAACAAGATGAAGAGTAGACTCTTTTTGAATATTATAATCAGA 140569 ||||||||| | | || || || ||||| || ||||| || || || || || ||||| Sbjct 111227 ACCACCACGAAGGCGGAGGACGAGGTGAAGGGTGGACTCCTTCTGGATGTTGTAGTCAGA 111168 Query 140570 TAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATTAGACGTTGCTGATCAGGAGG 140629 | || || || || || || || || || || ||||| ||||| ||||| || ||||| Sbjct 111167 AAGAGTACGGCCGTCCTCGAGCTGCTTGCCGGCGAAGATCAGACGCTGCTGGTCGGGAGG 111108 Query 140630 AATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCAATCGAATCAGATGGTTCAAC 140689 ||||||||| || |||||||| || | ||| |||||||| || | ||| | || || Sbjct 111107 AATTCCTTCCTTGTCCTGAATCTTGGATTTGACATTATCGATGGTATCGCTAGACTCCAC 111048 Query 140690 TTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAAAATCTGCAT 140737 || || || | ||||| || || || || ||||| ||||||||||| Sbjct 111047 CTCGAGGGTGATAGTCTTGCCCGTAAGGGTCTTTACGAAAATCTGCAT 111000 >seq5 Length=3971467 Score = 109 bits (120), Expect = 2e-18 Identities = 174/247 (70%), Gaps = 2/247 (1%) Strand=Plus/Minus Query 378201 ATCTTCTAATGCTTTAATAAGTCGTCGAGAAATATAACCAGTTTGACTAGTTTTAACTGC 378260 |||||||| || || | |||||| || |||||||||||| | | || || ||||| Sbjct 2358117 ATCTTCTAGAGCCTTCACAAGTCGACGTTGAATATAACCAGTCTCAGCTGTCTTGACTGC 2358058 Query 378261 AGTATCAATTAAACCAACACGACCACCCATTGCATGGAAGAATAATTCAGTAGGAGTAAG 378320 |||||| || ||||| |||||||| |||| || |||||||| || || | || || | Sbjct 2358057 AGTATCGATCAAACCTTCACGACCAGCCATGGCGTGGAAGAAAAACTCGGACGGCGTCAA 2357998 Query 378321 TCCACCAATAAATGAACTCTCAATAAATCCTCTTGCGCCTGGCGAATCATCATATTTTGT 378380 || | || | | || |||| | |||||| | || | || || | |||| || || Sbjct 2357997 ACCTCGAAGATAGGAGTTCTCGACAAATCCACGGGCCTCAGGAGAGTAGTCATCCTTGGT 2357938 Query 378381 ATAATGAGGTAATGTAC-GATTCTCAAACCCATATGGAATTCGTTTTCCATCAACATTCT 378439 | | || |||||||| | | | | ||||| | | || || |||||||| ||||| ||| Sbjct 2357937 AAAGTGGGGTAATGTCCTGTATTTGAAACCGA-AGGGGATACGTTTTCCTTCAACGATCT 2357879 Query 378440 GTTGACC 378446 | || || Sbjct 2357878 GCTGTCC 2357872 >seq12 Length=872789 Score = 107 bits (118), Expect = 6e-18 Identities = 423/663 (64%), Gaps = 3/663 (0%) Strand=Plus/Plus Query 349262 GAAATAATTGCAAATGATCAAGGTAACAGAACAACGCCATCATACGTTGCATTTACCGAA 349321 ||||| ||||| ||||| || |||||| |||| || || || | ||| || || || || Sbjct 631696 GAAATCATTGCCAATGACCAGGGTAACCGAACCACACCTTCGTTCGTCGCTTTCACGGAT 631755 Query 349322 ACTGAGCGTATGATTGGTGATTCTGCAAAAAATCAAGCTGCTGCTAATCCAAAAAATACG 349381 || ||||| |||| || ||| | || || || || | || || || | || || Sbjct 631756 ACCGAGCGATTGATCGGAGATGCCGCCAAGAACCAGGTCGCCATGAACCCTCAGAACACC 631815 Query 349382 GTTTTTGATGCTAAGCGACTTATTGGTAGAAGTTTTTCTGACAAATCTACACAATCTGAT 349441 || || || || ||||| | |||||| | | || | ||| || | || Sbjct 631816 GTATTCGACGCCAAGCGTTTGATTGGTCGCAAGTTCGCCGACCCTGAGGTTCAGGCCGAC 631875 Query 349442 CTAAAACATTTTCCTTTTACTGTTGTTCCAAAAGACGGTGATAAACCAATTATTGAGGTT 349501 | || || || || || | |||| | | ||| | | || || | || ||||| Sbjct 631876 ATGAAGCACTTCCCCTTCAAGATTGT-CGACAAGGC--TTCCAAGCCCGTCATCGAGGTC 631932 Query 349502 GAATATAAAGGTGAACAAAAACAATTTTTACCCGAAGAAATTTCATCAATGGTTTTAGTT 349561 || || || || || | || || || || |||||||| || || ||||| | Sbjct 631933 GAGTACAAGGGCGAGAACAAGCAGTTCACCCCGGAAGAAATCTCCTCCATGGTCCTCACC 631992 Query 349562 AAAATGAAGGAAATTGCTGAAGCATATTTAGGTGAAACAGTAACTGATGCTGTTATTACT 349621 || ||| || | || || | || |||||| || || || | || || || || Sbjct 631993 AAGATGCGTGAGACCGCCGAGTCTTACCTAGGTGGCACCGTCACCAACGCCGTCATCACC 632052 Query 349622 GTACCAGCCTATTTTAATGATGCCCAGCGTTCTGCAACAAAAGATGCTGGCAGCATTGCG 349681 || || ||||| || || || || ||||| || || || || || || ||| || Sbjct 632053 GTCCCCGCCTACTTCAACGACGCTCAGCGACAGGCTACCAAGGACGCCGGTCTCATCGCC 632112 Query 349682 GGGTTAAATGTTCTAAGAATGATTAATGAACCCACTGCTGCAGCAATTGCATATGGGCTT 349741 || | || || || | || || || || || || ||||| || || || || || || Sbjct 632113 GGTCTCAACGTCCTCCGTATCATCAACGAGCCTACCGCTGCCGCCATCGCCTACGGTCTC 632172 Query 349742 GATAAAATGAGTGACCAAGaaaaaaaTATTCTTATTTTTGATTTAGGTGGTGGTACTTTT 349801 || || | || || || || | || || || || || |||||||||||||| Sbjct 632173 GACAAGAAGACCGAGGGTGAGCGCAACGTCCTCATCTTCGACTTGGGTGGTGGTACTTTC 632232 Query 349802 GATGTATCACTACTAACACTTGAAGAGGGAATTTTTGAAGTTAAAGCAACTGCTGGTGAT 349861 ||||| || || || || | || || || || || || || || | || || ||||| Sbjct 632233 GATGTTTCCCTCCTTACCATCGAGGAAGGTATCTTCGAGGTCAAGTCCACCGCCGGTGAC 632292 Query 349862 ACACATCTTGGTGGAGAAGATTTTGATAATCGTCTCGTTTCGCATTTTGTTAAAGAATTT 349921 || || | ||||| || || || || || |||||||| || || || || || ||| Sbjct 632293 ACTCACTTGGGTGGTGAGGACTTCGACAACCGTCTCGTGAACCACTTCGTCAACGAGTTT 632352 Query 349922 AAG 349924 ||| Sbjct 632353 AAG 632355 >seq3 Length=5105224 Score = 107 bits (118), Expect = 6e-18 Identities = 131/179 (73%), Gaps = 0/179 (0%) Strand=Plus/Minus Query 140550 TTTTGAATATTATAATCAGATAATGTTCGCCCATCTTCAAGTTGTTTTCCAGCAAAGATT 140609 || || || || || ||||| | || || ||||| || || || |||||||| ||||| Sbjct 833602 TTCTGGATGTTGTAGTCAGAGAGGGTCCGGCCATCCTCGAGCTGCTTTCCAGCGAAGATC 833543 Query 140610 AGACGTTGCTGATCAGGAGGAATTCCTTCTTTATCCTGAATTTTAGCTTTTACATTATCA 140669 ||||| ||||| ||||| ||||||||||| || |||||||| || | || ||||| ||| Sbjct 833542 AGACGCTGCTGGTCAGGGGGAATTCCTTCCTTGTCCTGAATCTTGGACTTGACATTGTCA 833483 Query 140670 ATCGAATCAGATGGTTCAACTTCAAGTGTAACTGTCTTTCCGGTTAGTGTTTTTACAAA 140728 || | || || | || || || || || | ||||| || || || || || || || Sbjct 833482 ATGGTGTCGGAAGACTCCACCTCGAGGGTGATGGTCTTGCCCGTCAGGGTCTTAACGAA 833424 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1515254069958651