Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_028110.1 Length=171045 Score E Sequences producing significant alignments: (Bits) Value seq11 251 8e-62 seq1 98.7 1e-15 >seq11 Length=1431289 Score = 251 bits (278), Expect = 8e-62 Identities = 509/749 (68%), Gaps = 6/749 (1%) Strand=Plus/Plus Query 53193 TCATGCGCGTCGCCTTGGGTATCCACGGTGACGAC-TACACGCGTGTCCGTGAGACGTAC 53251 ||||||| || ||| | |||||| ||||||||| | | | ||| |||||| ||| Sbjct 451495 TCATGCGTGTTGCCGTCGGTATCTGGGGTGACGACGTTGAAAAG-GTCATTGAGACATAC 451553 Query 53252 GACTTAATGAGCCAAAAGTACTTTACGCACGCCACGCCAACCCTGTTCAACGCTGGTACG 53311 | | ||| | || || || || |||||| | || ||||| |||||||| ||||| Sbjct 451554 AATCTCATGTCCAGCAAATATTTCACCCACGCCTCCCCCACCCTTTTCAACGCCGGTACC 451613 Query 53312 AATCACCCTCAGATGTCGAGCTGCTTCCTGGTGGCGATGAAGGATGACTCGATCGACGGC 53371 || ||||| | || || ||||| || | |||||||||||| || || || Sbjct 451614 CCCCAGGCTCAGCTTTCCTCTTGTTTCCTTGTAGACATGAAGGATGACAGCATTGAGGGT 451673 Query 53372 ATCTACGAGACGCTCAAGGAGTGTGCCCACATCTCCAAGTGGTCGGGTGGTATCGGTATC 53431 ||||| || || |||||| ||||| ||||||||| | |||||||||| ||| || Sbjct 451674 ATCTATGACACCCTCAAGACTTGTGCTATGATCTCCAAGATGGCGGGTGGTATTGGTCTC 451733 Query 53432 CACTGCTCGAACGT--CCGTGCGAACGGCACACCAATCAAGGGGACGAACGGCGTCGCCG 53489 || | || | ||| ||| | | ||| | || || || ||||| | Sbjct 451734 AAC-GTTC-ACCGTATCCGATCTACCGGATCTTACATTGCCGGTACCAACGGTACTTCTA 451791 Query 53490 ATGGAATCGTGCCTATGCTCCGCGTCTTCAACAACACGGCCCGGTACGTCAACCAGGGTG 53549 | || || || |||||||| || |||||||||||||||||| | ||||| ||||||||| Sbjct 451792 ACGGTATTGTACCTATGCTTCGTGTCTTCAACAACACGGCCAGATACGTTGACCAGGGTG 451851 Query 53550 GTGGGAAGCGCAAGGGGTCGTTCGCCATCTACCTCGAGCCGTGGCACGCCGACATTATGG 53609 | ||| | || | || |||||||||||||||||||||||| | || || | | Sbjct 451852 GCAACAAGAGACCTGGTGCCTTTGCCATCTACCTCGAGCCGTGGCACTCGGATGTTTTCG 451911 Query 53610 AGTTTCTCGAGCTGCGTCTGAATCAGGGTGACGAAGAGATGCGCTGCCGTGACCTGTTTA 53669 |||| | || || ||| ||| || || | || || | ||| || || || || Sbjct 451912 AGTTCTTGGATCTCCGTAAGAACCACGGAAAGGAGGAAGTTCGCGCTCGCGATCTTTTCC 451971 Query 53670 CAGCTCTGTGGATTCCGGACCTCTTCATGCAAAAGGTGGAGAAGGACGAGGAGTGGTACC 53729 ||||| |||||||| || || |||||| | || |||||| ||| || ||| | Sbjct 451972 TTGCTCTCTGGATTCCCGATCTTTTCATGAAGCGTGTTGAGAAGAACGGTGAATGGACGC 452031 Query 53730 TGATGTGCCCGAACGAGTGCCCCGGCCTCCAGGGTGTCTACGGTGAGGAGTTTAACGAGA 53789 | ||||| || ||||||||||| |||||| | |||||||| || ||||| | | Sbjct 452032 TCATGTGTCCCAACGAGTGCCCTGGCCTCGCTGACGTCTACGGCGATGAGTTCGAGGCTC 452091 Query 53790 TGTATCGGACGTACGCAGTTCAGGGCCGCTACAAGAAGAAGGTCAAGGCGCGTGAGGTAT 53849 |||| || ||||| || ||||||| | ||||||||||||| | | | | Sbjct 452092 TGTACGAGAAGTACGAAGCCGAGGGCCGTGGCCGCCAGAAGGTCAAGGCCCAGAAACTTT 452151 Query 53850 GGGATGCAATCCTCAAGAGCCAGGTGGAGACGGGAACGCCGTACATGTGCTACAAGGATT 53909 || |||| |||||| || ||| ||||| || | || | |||| ||||||||| Sbjct 452152 GGTATGCCATCCTCGAGGCTCAGACTGAGACTGGTAACCCATTCATGCTTTACAAGGATC 452211 Query 53910 CGGTCAACGAGAAGAGCAACCAGAAGAAC 53938 |||| |||||||||||||||||| Sbjct 452212 ACTGCAACCGCAAGAGCAACCAGAAGAAC 452240 Score = 100 bits (110), Expect = 3e-16 Identities = 113/145 (78%), Gaps = 10/145 (7%) Strand=Plus/Plus Query 55786 TGCTGATCGTGGTGCGTACATCGACCAGTCCCAGTCTCTGAACATCTTCATG-GAGAATC 55844 ||| || |||||||||| |||||| |||||||||||||| ||||| |||| ||||| | Sbjct 453071 TGCCGACCGTGGTGCGTTCATCGATCAGTCCCAGTCTCTTAACATTCACATGAGAGAA-C 453129 Query 55845 CTTCACTGGCCAAGTT---GAGCTCGATGCACTTTTACGGG-TGGAAGAAGGGACTCAAG 55900 | | ||| |||| | |||| |||||| || ||||| |||||| || |||||| Sbjct 453130 CCACTATGGGCAAGATCACGAGC---ATGCAC-TTCACGGGTTGGAAGCTCGGTCTCAAG 453185 Query 55901 ACGGGTATGTACTATCTGCGGACCC 55925 ||||| ||||||||||| || |||| Sbjct 453186 ACGGGAATGTACTATCTCCGTACCC 453210 >seq1 Length=7732581 Score = 98.7 bits (108), Expect = 1e-15 Identities = 288/444 (65%), Gaps = 0/444 (0%) Strand=Plus/Minus Query 151876 CCGGTACCGATGCCCTCTGCACCGTTGACCAGAATCATCGGCACAATAGGGGCGTAAAAC 151935 || ||||| || || ||||| ||||| ||||| | ||| || | | || ||||| | Sbjct 5691162 CCAGTACCAATACCATCTGCGCCGTTCACCAGCACCATGGGAATGACGGGAGCGTATACT 5691103 Query 151936 TCCGGCTCCACCTGTTGACCGTCATCCATCACGTATTTCAAAACGGAATTGTCAGCCGGA 151995 | ||| || | ||| ||| || |||| | | || |||| | | || || Sbjct 5691102 TTCGGTTCAATGCGTTTACCATCTTCCACTAGATGTTCCAAATTTGGTTCATCTAATGGG 5691043 Query 151996 TCGAATATCCGTCGAGTCATAGGACTCAAACGCGTGAAGATGTATCGGGAGCTGGCCGCA 152055 | || | || || | | |||| || ||| ||| ||||||||| | || || || Sbjct 5691042 TTAAAGACGCGACGTGCGAAAGGAGACAGACGTGTGTGGATGTATCGAGCACTAGCAGCG 5690983 Query 152056 TCCTTGCCACCTGCCAGCCGCGTTCCAAACTGTCCAGAGGGCTCGAGGAGGTTGAGGTTG 152115 || ||||| || || | | || || | ||| ||||| | ||||| ||| Sbjct 5690982 TCAGAACCACCCGCAAGTCTGGAACCGAAATTTCCGCTAGGCTCTAAACAGTTGACATTG 5690923 Query 152116 TTGGCGCCCACGAAATTCTGAGCCAAATTCACAATCGTGCCCTGCAGACTCGCTTCACCG 152175 || | ||||| ||||||||||| | ||| || || ||||| ||||||||| Sbjct 5690922 TTTGAACCCACAAAATTCTGAGCGAGGCCCACGATAGTCTGCTGCAATGATGCTTCACCG 5690863 Query 152176 TGGTGATACGCCGTCTGCTCCGCGATGTATCCCGCCAACTGCGCCACCTTCATGTCCGTC 152235 ||||| || || ||||| |||| || || || ||||| | || || ||||| | Sbjct 5690862 TGGTGGTATGCTGTCTGTTCCGAGACATAACCAGCCAATTCGATGACTTTTTTGTCCTTG 5690803 Query 152236 GTCAGGTTCTTCTTGAGACAGGCGTAAATCACCTTGCGCTGGGATGGTTTCAAACCGTCC 152295 || ||| ||||| ||||||||| || |||||||| || || || |||||||| Sbjct 5690802 ACCAAATTCCGCTTGAAACAGGCGTAGATAACCTTGCGTTGACCCGGCTTAAAACCGTCA 5690743 Query 152296 ACCACGTGAGGAATCGAACGCTTG 152319 | ||| || || |||||| || Sbjct 5690742 ATAACGGATGGGATAGAACGCATG 5690719 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 547215883716600