Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Endocalyx_20cinctus_20[genbank_20GCA_5F001600455.1_202016-03-01] 17 sequences; 44,773,950 total letters Query= NC_028112.1 Length=178262 Score E Sequences producing significant alignments: (Bits) Value seq11 239 5e-58 seq15 185 1e-41 seq6 181 1e-40 seq3 147 2e-30 >seq11 Length=1431289 Score = 239 bits (264), Expect = 5e-58 Identities = 919/1426 (64%), Gaps = 38/1426 (3%) Strand=Plus/Minus Query 80356 AACTCTCCCGCGAGGGTGCGACGCAGATACAGGTTTGTAGTGTAAGGCTCAAATGCCTCG 80415 ||||||||||||||| |||||| || | ||| | |||||||||||||| ||| Sbjct 452887 AACTCTCCCGCGAGGACACGACGCGAGTAGATGTTGGAGGTGTAAGGCTCAAAGCACTCA 452828 Query 80416 TTGTTTCCGAGGATCTGAGCCGTGCTCGCCGTCGGCATCGGGCCGACCAACAGTGAATTC 80475 ||||| || | ||| || | ||||| || || ||||| ||| ||||||||| || Sbjct 452827 TTGTTACCCAAGATTTGCGAAGTGCTGGCTGTGGGCATGGGGGCGACCAACAAACTGTTA 452768 Query 80476 CGCAGGCCGTGCTTCTTGATATCCTCGCGCAAATCTGACCAAAAATCA---ACCCCAACG 80532 || | ||||||| |||||| | || || | || || | || | | | Sbjct 452767 CGGACACCGTGCTGCTTGATCTGCT-GCTTTAGACTATCCCAGTCCCAGAGATCGGTGGG 452709 Query 80533 CTGTGAC--CCCACATGTCGTGCTGCAAGATGCCCTCCGACGCCGGAGACCCCGCGAACG 80590 || |||| |||||||||||| || | ||| |||| || |||| || ||| || | Sbjct 452708 CT-TGACATCCCACATGTCGTATTGAAGGATACCCTGGGAGACCGGGGAGCCCTCGTAGC 452650 Query 80591 TCTCGTACGGGCCCTCCGTCTTGGCCAGCTCACACGACTCCATAAGGGCCGCGTGATAAA 80650 | |||| || || ||| || ||||| ||| || | | ||| ||||| || | Sbjct 452649 TGGCGTAGGGACCGAGTTCCTTAGCGAGCTCCATGGACGCCGTCAAGGCGGCGTGGTAGA 452590 Query 80651 TGCACTCAAAGACGCCCTTGTTCACACCGCGCGCCTGTGGGTCGTCGAACGACAAGCCCA 80710 || ||| |||| ||||| | |||| || ||||| | | | | Sbjct 452589 TGGTCTCGAAGATTTGTTTGTTAAGTAACTTAGCCTCAGGCGATTCGAATGGGTATCGGA 452530 Query 80711 TCATCATGAACACGTCAGCCAGGCCCTGAACGCCGATGGCGATCGGGCGGTGGCGCTTGT 80770 | ||| | || || || || || || || | |||| || ||||||||| ||| Sbjct 452529 GAGCTAGGAAAGCATCGGCAAGACCTTGGACACCCAATCCGATGGGACGGTGGCGCATGT 452470 Query 80771 TCGATCGCTCG-GCCTCCGGAATTGGGTAAAAGTTATTATCGATGACGCGGTTCAGGTTG 80829 | | | || ||||| || | ||||| ||| || |||| |||||| || Sbjct 452469 T-GCTGTTGCGAGCCTCAGGTACGGGGTAGTGGTTGACCTCAATGATCTTGTTCAGATTT 452411 Query 80830 CGTGTAACAACCCGTGTAACATCATGAAGTTTCTGAAAGTCGAATTGGTTCCCCTT---- 80885 || || ||| | ||| || || | ||||| || ||| | | | | || Sbjct 452410 CGCACGACCACCTGGACAACGTCGTGCAACTTCTGGAAATCGTAGGCGCCCGCGTTGTAG 452351 Query 80886 --CACAAATGCCGG-AAGGCTCAGGGACGCCAGATTGCACACGGCCACCTCTTCAGCATC 80942 |||| | | || ||||| ||||| ||||| |||||||| || ||||| |||| | | Sbjct 452350 TCCACATACGAAGGTAAGGCA-AGGGAAGCCAGGTTGCACACAGCGACCTCATCAGGAGC 452292 Query 80943 TGTAAACTCGACGATTTCCGTGCACAAATTAGAAGACTTAATTGTACCCAGGTTTTTCTG 81002 | |||| | || || ||||| | |||||| ||| || |||||||| ||||| Sbjct 452291 CGAGTACTCAATAATCTCGGTGCAGAGGTTAGAACTGCGAATAGTTCCCAGGTTCTTCTG 452232 Query 81003 GTTTGACTTGGCGTTGCAAGCGTCCTTGTAGCACATGTACGGGGTACCGGTCTCGACCTG 81062 ||| |||| |||||| |||||||| |||| | ||| |||| ||||| ||| Sbjct 452231 GTTGCTCTTGCGGTTGCAGTGATCCTTGTAAAGCATGAATGGGTTACCAGTCTCAGTCTG 452172 Query 81063 TGACTTGAGGATGGCGTCCCAAATCTCGCGCGCCTTGACCACCTTGCGGAATTTGCCTTC 81122 | || ||||||||| | ||||| | | ||||||||| || |||| ||| || Sbjct 452171 AGCCTCGAGGATGGCATACCAAAGTTTCTGGGCCTTGACCTTCTGGCGGCCACGGCCCTC 452112 Query 81123 GGCCACATACTTGGCGTAAGCTTCGTCGAACTTGGCACCGTGAAGTTCAGTGAGGTCTGG 81182 ||| | ||||| |||| | ||||||| | |||| | |||| |||| | || Sbjct 452111 GGCTTCGTACTTCTCGTACAGAGCCTCGAACTCATCGCCGTAGACGTCAGCGAGGCCAGG 452052 Query 81183 GCACTCGTTAGGGCACATCAGGTGCCAGTCGGTGTCGTTCTCTACAGCCTTCATGAAAGC 81242 ||||||||| || ||||| || ||| || || ||||| ||| |||||||||| Sbjct 452051 GCACTCGTTGGGACACATGAGCGTCCATTCACCGTTCTTCTCAACACGCTTCATGAAAAG 451992 Query 81243 GTCAGGGATCCAGAGGGCGGTGAACAGGTCGCGGCAGCGCG--CCTCCTCATCACCCTGG 81300 || || |||||||| || ||| || ||||| |||||| | ||||| | || ||| Sbjct 451991 ATCGGGAATCCAGAGAGCAAGGAAAAGATCGCG--AGCGCGAACTTCCTCCTTTCCGTGG 451934 Query 81301 TTGAGGCGCAACTCGAGAAAGTCCATGATGTCCGCATGCCATGGCTCCAGATACACGGCG 81360 || || | || | || || | | |||| ||||| ||||| || || | ||| Sbjct 451933 TTCTTACGGAGATCCAAGAACTCGAAAACATCCGAGTGCCACGGCTCGAGGTAGATGGCA 451874 Query 81361 ATCG-AC-----CCCTTGCGACGGCCACCCTGGTTGACGTAACGGGCAGTCGCGTTAAAT 81414 | | || | |||| ||||||||||| ||||| | ||| || ||| || Sbjct 451873 AAGGCACCAGGTCTCTTG---TTGCCACCCTGGTCAACGTATCTGGCCGTGTTGTTGAAG 451817 Query 81415 ACACGCAACATAGGGATGATACCATCTGACTGACCGTTCGTACCCACGATACGCGACCCC 81474 ||||| | |||||| | ||||| | || |||||| ||||| | || || || Sbjct 451816 ACACGAAGCATAGGTACAATACCGTTAGAAGTACCGTTGGTACCGGCAATGTAAGATCCG 451757 Query 81475 TTGG--CGCGCACCTTGCTGATTGAAAGACCGATGCCACCTGACCACTTTGAAATCTGAG 81532 | | || || || ||| ||||| || ||||| | | ||| || ||| || Sbjct 451756 GTAGATCGGATACGGTGAACGTTG--AGACCAATACCACCCGCCATCTTGGAGATCATAG 451699 Query 81533 CACACCGGTTCATGGTCTCATAAATTCCCTCGATGCTATCTTTTTTCATGTCAAGCAAGA 81592 |||| || | ||| ||||| || ||||| ||||| || | |||||||| | | || Sbjct 451698 CACAAGTCTTGAGGGTGTCATAGATACCCTCAATGCTGTCATCCTTCATGTCTACAAGGA 451639 Query 81593 AACAGCTTGACATCTGAGGGCTTTTTGAG--CCGGCATTGAACAGTGTTGGGGTCGCGTG 81650 |||| || | |||| || | | | ||||| ||||| || || |||| ||||| Sbjct 451638 AACAAGAGGAAAGCTGA--GCCTGGGGGGTACCGGCGTTGAAAAGGGTGGGGGAGGCGTG 451581 Query 81651 AATGAAATAACGGTTTGACATCAGGTCATAGGTTTCCTTGACGCGTGGAATATCGTCACC 81710 ||||||| | | ||||| || | || || || |||| | || |||||||| Sbjct 451580 GGTGAAATATTTGCTGGACATGAGATTGTATGTCTCAATGACCTTTTCAACGTCGTCACC 451521 Query 81711 GTGAATACCGATAGCTACACGCATAAACATGTACTGGGGCGTCTCG 81756 ||||||| || |||||||| | ||||| ||| ||| |||| Sbjct 451520 CCAGATACCGACGGCAACACGCATGATCATGTGCTGCGGCCGCTCG 451475 Score = 82.4 bits (90), Expect = 9e-11 Identities = 126/177 (71%), Gaps = 2/177 (1%) Strand=Plus/Minus Query 80005 ACCGTCACCTGAATTGGCTTGGCCTTTGCCCGCGTCCGCAGATAGTACATGCCCGTCTTG 80064 || || | ||| || |||| ||| || | || || ||||||||||| ||||||||| Sbjct 453241 ACGGTGAACTGGATGGGCTGGGCGGCAGCTTGGGTACGGAGATAGTACATTCCCGTCTTG 453182 Query 80065 AGGCCCTTCTTCCAGCCGTACAGGTGCATAGAACTGAGCTTCGCAAGTGTGGGGTTCTC- 80123 || || |||||| || | |||||| ||| ||| | | || |||||||| Sbjct 453181 AGACCGAGCTTCCAACCCGTGAAGTGCATGCTCGTGATCTTGCCCATAGT-GGGTTCTCT 453123 Query 80124 CATGAAGATGTTCAGAGACTGAGACTGACAGATGAAAGCCCCACGATCTGCCGCCAT 80180 |||| ||||| |||||||| |||||| |||||| || ||||| || || ||||| Sbjct 453122 CATGTGAATGTTAAGAGACTGGGACTGATCGATGAACGCACCACGGTCGGCAGCCAT 453066 >seq15 Length=310649 Score = 185 bits (204), Expect = 1e-41 Identities = 179/230 (78%), Gaps = 0/230 (0%) Strand=Plus/Plus Query 27403 ATAATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCA 27462 || ||||| || || || ||||| ||||| ||||||||||| || || ||||| ||||| Sbjct 110997 ATCATGCAGATTTTCGTAAAGACCCTTACGGGCAAGACTATCACCCTCGAGGTGGAGTCT 111056 Query 27463 GGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGAC 27522 | |||| ||| | ||| | || | || |||||||||||||| ||||||||||| ||| Sbjct 111057 AGCGATACCATCGATAATGTCAAATCCAAGATTCAGGACAAGGAAGGAATTCCTCCCGAC 111116 Query 27523 CAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTAT 27582 ||||||||||| || || || || ||||| |||||||| | ||||| || | ||||| Sbjct 111117 CAGCAGCGTCTGATCTTCGCCGGCAAGCAGCTCGAGGACGGCCGTACTCTTTCTGACTAC 111176 Query 27583 AATGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 || |||| ||||| ||||| ||||| || ||| | || ||||| ||||| Sbjct 111177 AACATCCAGAAGGAGTCCACCCTTCACCTCGTCCTCCGCCTTCGTGGTGG 111226 >seq6 Length=3640113 Score = 181 bits (200), Expect = 1e-40 Identities = 169/215 (79%), Gaps = 0/215 (0%) Strand=Plus/Minus Query 27418 GTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGTGATAGCATTGCA 27477 |||||||| |||||||||||||| || || |||||||| ||||| || | ||||| Sbjct 612283 GTCAAGACCCTTACCGGCAAGACCATCACCCTTGAGGTCGAGTCTTCCGACACCATTGAC 612224 Query 27478 AATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAGCAGCGTCTAATT 27537 || | ||| | || || ||||| |||||||| || ||||| ||||||||||| | || Sbjct 612223 AACGTCAAGTCGAAGATCCAGGATAAGGAGGGCATCCCTCCCGACCAGCAGCGATTGATC 612164 Query 27538 TTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAATGTCCAAAAGGAA 27597 |||||||||||||| |||||||||| |||||||| | ||||| || | || ||||| Sbjct 612163 TTTGCTGGTAAGCAGCTCGAGGATGGCCGTACCCTTTCGGACTACAACATTCAGAAGGAG 612104 Query 27598 TCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 |||||||| || || ||| | |||||||| ||||| Sbjct 612103 TCCACTCTCCACCTTGTCCTTCGTCTTCGTGGTGG 612069 Score = 168 bits (186), Expect = 8e-37 Identities = 174/228 (76%), Gaps = 0/228 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| || || || ||||| |||||||||||||| || ||||||||||| ||||| Sbjct 612602 ATGCAGATTTTCGTTAAGACCCTTACCGGCAAGACCATCACTCTTGAGGTCGAGTCTTCC 612543 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 || | || | || | ||| | || || ||||||||||| || |||||||| |||||| Sbjct 612542 GACACTATCGACAACGTTAAGTCGAAGATCCAGGACAAGGAAGGTATTCCTCCTGACCAG 612483 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 ||||| | ||||| |||||||||||||||||||| | ||| || || | ||||| || Sbjct 612482 CAGCGATTGATTTTCGCTGGTAAGCAACTCGAGGACGGTCGCACTCTCTCCGACTACAAC 612423 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGA 27633 |||| ||||| || || || || | ||| | ||||| || |||||| Sbjct 612422 ATCCAGAAGGAGTCTACCCTCCACTTGGTCCTCCGTCTCCGTGGTGGA 612375 Score = 152 bits (168), Expect = 6e-32 Identities = 174/231 (75%), Gaps = 2/231 (1%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 |||||||||||||||||||| || ||||| ||||| || || || ||||| || || Sbjct 611839 ATGCAAATCTTTGTCAAGACCCTCACCGGAAAGACCATCACACTCGAGGTGGAATCTTCG 611780 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| ||||| || ||||| || || |||||||||||||| || || || |||||| Sbjct 611779 GATACCATTGACAACGTGAAGAGCAAGATCCAGGACAAGGAGGGTATCCCGCCTGACCAG 611720 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCT-AGCAGACTATAA 27584 || ||||| || || || |||||||| | ||||||| || || | ||| ||||| || Sbjct 611719 CAACGTCTTATCTTCGCCGGTAAGCAGTTGGAGGATGGCCGAACTTTGAGC-GACTACAA 611661 Query 27585 TGTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGGACA 27635 |||| ||||| || |||||||| | || | ||||| || ||||| || Sbjct 611660 CATCCAGAAGGAGTCGACTCTTCACTTGGTTCTTCGTCTCCGTGGTGGCCA 611610 Score = 134 bits (148), Expect = 2e-26 Identities = 166/227 (73%), Gaps = 0/227 (0%) Strand=Plus/Minus Query 27406 ATGCAAATCTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGTCAGGT 27465 ||||| ||||| |||||||| | || || ||||| |||||||| ||||| || || Sbjct 612067 ATGCAGATCTTCGTCAAGACCTTGACGGGTAAGACGATTACTCTCGAGGTCGAATCTTCC 612008 Query 27466 GATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAGACCAG 27525 |||| || | || | ||| | || ||||| ||||||||||| || || || |||||| Sbjct 612007 GATACTATCGACAACGTCAAGTCGAAGATTCAAGACAAGGAGGGTATCCCACCTGACCAG 611948 Query 27526 CAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACTATAAT 27585 || ||||| || || ||||| ||||| | || |||| || || | | |||||||| Sbjct 611947 CAACGTCTCATCTTCGCTGGAAAGCAGTTGGAAGATGGACGAACTTTGTCCGACTATAAC 611888 Query 27586 GTCCAAAAGGAATCCACTCTTCATCTAGTCTTGCGTCTTCGCGGTGG 27632 | || || |||||||| ||||| | ||| | ||||| || ||||| Sbjct 611887 ATTCAGAAAGAATCCACCCTTCACTTGGTCCTCCGTCTCCGTGGTGG 611841 >seq3 Length=5105224 Score = 147 bits (162), Expect = 2e-30 Identities = 150/195 (77%), Gaps = 2/195 (1%) Strand=Plus/Plus Query 27403 ATAATGCAAAT--CTTTGTCAAGACGCTTACCGGCAAGACTATTACTCTTGAGGTTGAGT 27460 |||||| ||| ||| || ||||| || || |||||||| || || || ||||| |||| Sbjct 833410 ATAATGTGAATAGCTTCGTTAAGACCCTGACGGGCAAGACCATCACCCTCGAGGTGGAGT 833469 Query 27461 CAGGTGATAGCATTGCAAATTTGAAGGCTAAAATTCAGGACAAGGAGGGAATTCCTCCAG 27520 | || | ||||| ||| | ||| | || |||||||||||||| |||||||| || | Sbjct 833470 CTTCCGACACCATTGACAATGTCAAGTCCAAGATTCAGGACAAGGAAGGAATTCCCCCTG 833529 Query 27521 ACCAGCAGCGTCTAATTTTTGCTGGTAAGCAACTCGAGGATGATCGTACCCTAGCAGACT 27580 ||||||||||||| || || ||||| ||||| |||||||||| || ||||| | |||| Sbjct 833530 ACCAGCAGCGTCTGATCTTCGCTGGAAAGCAGCTCGAGGATGGCCGGACCCTCTCTGACT 833589 Query 27581 ATAATGTCCAAAAGG 27595 | || |||| |||| Sbjct 833590 ACAACATCCAGAAGG 833604 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 570310278809040